Entry: aGFF-class
Aliases: aGFF-class plot,aGFF-method print,aGFF-method show,aGFF-method
Keywords: classes
Description: Class for storing GFF-like data
URL: ../../../library/ACME/html/aGFF-class.html

Entry: aGFFCalc-class
Aliases: aGFFCalc-class plot,aGFFCalc-method print,aGFFCalc-method show,aGFFCalc-method
Keywords: classes
Description: Class "aGFFCalc"
URL: ../../../library/ACME/html/aGFFCalc-class.html

Entry: do.aGFF.calc
Aliases: do.aGFF.calc
Keywords: htest
Description: Perform ACME calculation
URL: ../../../library/ACME/html/do.aGFF.calc.html

Entry: example.agff
Aliases: example.agff
Keywords: datasets
Description: An example ACME data structure of class aGFF
URL: ../../../library/ACME/html/example.agff.html

Entry: findClosestGene
Aliases: findClosestGene
Keywords: IO
Description: Find closest refseq gene
URL: ../../../library/ACME/html/findClosestGene.html

Entry: findRegions
Aliases: findRegions
Keywords: manip
Description: Find all regions in data above p-value threshold
URL: ../../../library/ACME/html/findRegions.html

Entry: getRefflat
Aliases: getRefflat
Keywords: IO
Description: Get the refflat table from ucsc for the given genome
URL: ../../../library/ACME/html/getRefflat.html

Entry: read.resultsGFF
Aliases: read.resultsGFF
Keywords: IO manip
Description: Read Nimblegen GFF files
URL: ../../../library/ACME/html/read.resultsGFF.html

Entry: write.sgr
Aliases: write.sgr
Keywords: IO
Description: Write Affy IGB .sgr format files
URL: ../../../library/ACME/html/write.sgr.html
