Entry: ABarray
Aliases: ABarray
Keywords: manip
Description: Utility to perform QA, data transformation and statistical analysis
URL: ../../../library/ABarray/html/ABarray.html

Entry: ABarrayGUI
Aliases: ABarrayGUI
Keywords: manip
Description: GUI for ABarray to perform QA, data transformation and statistical analysis
URL: ../../../library/ABarray/html/ABarrayGUI.html

Entry: calcsn
Aliases: calcsn
Keywords: manip
Description: Calculate SN summary for each group
URL: ../../../library/ABarray/html/calcsn.html

Entry: concord
Aliases: concord
Keywords: manip
Description: Calculate signal detection concordance
URL: ../../../library/ABarray/html/concord.html

Entry: cvv
Aliases: cvv
Keywords: manip
Description: CV calculation
URL: ../../../library/ABarray/html/cvv.html

Entry: cvvPlot
Aliases: cvvPlot
Keywords: hplot
Description: Plot CV value
URL: ../../../library/ABarray/html/cvvPlot.html

Entry: doANOVA
Aliases: doANOVA
Keywords: htest
Description: Perform one way or two way ANOVA
URL: ../../../library/ABarray/html/doANOVA.html

Entry: doLPE
Aliases: doLPE
Keywords: manip
Description: Perform LPE analysis
URL: ../../../library/ABarray/html/doLPE.html

Entry: doPlotEset
Aliases: doPlotEset
Keywords: manip hplot
Description: Produce a number of QA plot plus t and ANOVA test
URL: ../../../library/ABarray/html/doPlotEset.html

Entry: doPlotFCT
Aliases: doPlotFCT
Keywords: manip hplot htest
Description: Calculate fold change and t test, the plot
URL: ../../../library/ABarray/html/doPlotFCT.html

Entry: doVennDiagram
Aliases: doVennDiagram
Keywords: hplot
Description: Create Venn Diagram
URL: ../../../library/ABarray/html/doVennDiagram.html

Entry: drawVennDiagram
Aliases: drawVennDiagram
Keywords: hplot
Description: Draw Venn Diagram
URL: ../../../library/ABarray/html/drawVennDiagram.html

Entry: getMemberEset
Aliases: getMemberEset
Keywords: manip
Description: Produce a sub exprSet given a group and its members
URL: ../../../library/ABarray/html/getMemberEset.html

Entry: getPantherMap
Aliases: getPantherMap
Keywords: manip
Description: Create pie chart for probes involved in Panther Pathway
URL: ../../../library/ABarray/html/getPantherMap.html

Entry: hclusterPlot
Aliases: hclusterPlot
Keywords: hplot
Description: heatmap generation
URL: ../../../library/ABarray/html/hclusterPlot.html

Entry: icpPlot
Aliases: icpPlot
Keywords: hplot
Description: icp plot function
URL: ../../../library/ABarray/html/icpPlot.html

Entry: imputeFlag
Aliases: imputeFlag
Keywords: manip
Description: Perform imputation for missing values (FLAG > 5000)
URL: ../../../library/ABarray/html/imputeFlag.html

Entry: lpe.fdr.BH
Aliases: lpe.fdr.BH
Keywords: manip
Description: Perform FDR on LPE results
URL: ../../../library/ABarray/html/lpe.fdr.BH.html

Entry: mamaplot
Aliases: mamaplot
Keywords: hplot
Description: MA plot function
URL: ../../../library/ABarray/html/mamaplot.html

Entry: matrixPlot
Aliases: matrixPlot
Keywords: hplot
Description: heatmap for matrix
URL: ../../../library/ABarray/html/matrixPlot.html

Entry: mvaPair2
Aliases: mvaPair2
Keywords: hplot
Description: plot MA for each pair of columns
URL: ../../../library/ABarray/html/mvaPair2.html

Entry: panel.cor
Aliases: panel.cor
Keywords: hplot
Description: Create correlation panel
URL: ../../../library/ABarray/html/panel.cor.html

Entry: panel.scatter
Aliases: panel.scatter
Keywords: hplot
Description: Creat scatter plot
URL: ../../../library/ABarray/html/panel.scatter.html

Entry: qnNormalize
Aliases: qnNormalize
Keywords: manip
Description: Perform quantile normalization
URL: ../../../library/ABarray/html/qnNormalize.html

Entry: rgcolorsfunc
Aliases: rgcolorsfunc
Keywords: manip
Description: generate color map
URL: ../../../library/ABarray/html/rgcolorsfunc.html

Entry: savejpg
Aliases: savejpg
Keywords: device
Description: save device to jpg image file
URL: ../../../library/ABarray/html/savejpg.html

Entry: scaleColorBar
Aliases: scaleColorBar
Keywords: hplot
Description: Create scale for heatmap
URL: ../../../library/ABarray/html/scaleColorBar.html

Entry: snSummary
Aliases: snSummary
Keywords: manip
Description: Create summary information for S/N ratio
URL: ../../../library/ABarray/html/snSummary.html
