gomfAmat              package:ontoTools              R Documentation

_s_p_a_r_s_e _m_a_t_r_i_x _r_e_p_r_e_s_e_n_t_i_n_g _a_c_c_e_s_s_i_b_i_l_i_t_i_e_s
_o_f _t_e_r_m_s _i_n _G_O _M_F _g_r_a_p_h; _g_r_a_p_h _a_l_s_o _d_o_c_u_m_e_n_t_e_d _h_e_r_e

_D_e_s_c_r_i_p_t_i_o_n:

     sparse matrix representing accessibilities of terms in GO MF graph

_U_s_a_g_e:

     data(gomfAmat); data(goMFgraphDemo)

_F_o_r_m_a_t:

     The format is: list() - attr(*, "Dimnames")=List of 2 ..$ : chr
     [1:5399] "GO:0000005" "GO:0000006" "GO:0000007" "GO:0000008" ...
     ..$ : chr [1:5399] "GO:0000005" "GO:0000006" "GO:0000007"
     "GO:0000008" ... - attr(*, "mat")= list() ..- attr(*, "ra")= num
     [1:33263] 0 1 1 1 1 1 1 1 1 1 ... ..- attr(*, "ja")= int [1:33263]
     1 261 203 3073 1741 1744 2820 5367 2035 5356 ... ..- attr(*,
     "ia")= int [1:5400] 1 4 14 22 24 30 34 45 50 56 ... ..- attr(*,
     "dimension")= int [1:2] 5399 5399 ..- attr(*, "class")= atomic
     [1:1] matrix.csr .. ..- attr(*, "package")= chr ".GlobalEnv" -
     attr(*, "rowindex")=List of 2 ..$ n2i:length 0 <environment> ..$
     i2n:length 0 <environment> - attr(*, "colindex")=List of 2 ..$
     n2i:length 0 <environment> ..$ i2n:length 0 <environment> -
     attr(*, "class")= atomic [1:1] namedSparse ..- attr(*, "package")=
     chr ".GlobalEnv"

_S_o_u_r_c_e:

     built from bioconductor graph, GO and ontoTools package tools

