\HeaderA{ecoli.m52.genome}{Escherichia coli data}{ecoli.m52.genome}
\aliasA{ecoli.len}{ecoli.m52.genome}{ecoli.len}
\aliasA{ecoli.operon}{ecoli.m52.genome}{ecoli.operon}
\aliasA{ecoligenomeCHRLOC}{ecoli.m52.genome}{ecoligenomeCHRLOC}
\aliasA{ecoligenomeSTRAND}{ecoli.m52.genome}{ecoligenomeSTRAND}
\aliasA{ecoligenomeSYMBOL}{ecoli.m52.genome}{ecoligenomeSYMBOL}
\aliasA{ecoligenomeSYMBOL2AFFY}{ecoli.m52.genome}{ecoligenomeSYMBOL2AFFY}
\keyword{datasets}{ecoli.m52.genome}
\begin{Description}\relax
Meta-data related to Escherichia coli
\end{Description}
\begin{Usage}
\begin{verbatim}
data(ecoli.m52.genome)
data(ecoligenomeCHRLOC)
data(ecoligenomeSYMBOL2AFFY)
data(ecoligenomeSYMBOL)
data(ecoligenomeSTRAND)
data(ecoligenome.operon)
ecoli.len
\end{verbatim}
\end{Usage}
\begin{Format}\relax
The format for \code{ecoli.m52.genome} is \code{character}
with genome sequence.
The format for \code{ecoligenomeCHRLOC} is
an environment (as a hash table). Each key
is an Affyemtrix probe set ID, and each value is vector of
two integers (begining and end - see the details
below)
The format for \code{ecoligenomeSYMBOL2AFFFY}
is an environment (as a hash table). Each key is
a gene symbol name.
The format for \code{ecoligenomeSYMBOL}
is an environment (as a hash table). Each key
is an Affymetrix probe set id
\code{ecoli.len} is a variable containing the size of the genome in
\code{ecoli.m52.genome}.
\end{Format}
\begin{Details}\relax
The environments \code{ecoligenomeSYMBOL2AFFFY} and
\code{ecoligenomeSYMBOL} are like the ones in the
data packages built by \code{annBuilder}.

The environment
\code{ecoligenomeCHRLOC} differs: two integers are associated
with each key, one corresponds to the begining of the segment
the other to the end.

The environment ecoligenomeSTRAND returns a \code{logical}.
\code{TRUE} means that the orientation is `+', \code{FALSE} means
that the orientation is '-' (and \code{NA} is used when irrelevant
for the key).
\end{Details}
\begin{Source}\relax
\url{http://www.genome.wisc.edu/sequencing/k12.htm} and
\url{http://www.biostat.harvard.edu/complab/dchip/info_file.htm}
\end{Source}
\begin{Examples}
\begin{ExampleCode}
data(ecoli.m52.genome)

\end{ExampleCode}
\end{Examples}

