addFeatureData	addFeatureData-method
addFeatureData,eSet-method	addFeatureData-method
addFeatureData-methods	addFeatureData-method
alleleA	alleleA
alleleA,AnnotatedDataFrame-method	alleleA
alleleA,AnnotatedSnpCopyNumberSet-method	AnnotatedSnpCopyNumberSet-class
alleleA,AnnotatedSnpSet-method	AnnotatedSnpSet-class
alleleA,oligoSnpSet-method	alleleA
alleleA,SnpCallSet-class	AnnotatedSnpCallSet-class
alleleA,SnpCallSet-method	alleleA
alleleA,SnpCopyNumberSet-method	AnnotatedSnpCopyNumberSet-class
alleleB	alleleB
alleleB,AnnotatedDataFrame-method	alleleB
alleleB,AnnotatedSnpCopyNumberSet-method	AnnotatedSnpCopyNumberSet-class
alleleB,AnnotatedSnpSet-method	AnnotatedSnpSet-class
alleleB,oligoSnpSet-method	alleleB
alleleB,SnpCallSet-class	AnnotatedSnpCallSet-class
alleleB,SnpCallSet-method	alleleB
alleleB,SnpCopyNumberSet-method	AnnotatedSnpCopyNumberSet-class
AnnotatedSnpCallSet-class	AnnotatedSnpCallSet-class
AnnotatedSnpCopyNumberSet-class	AnnotatedSnpCopyNumberSet-class
AnnotatedSnpSet-class	AnnotatedSnpSet-class
annSnpset	annSnpset
centromere	centromere
chromosome	chromosome
chromosome,AnnotatedDataFrame-method	chromosome
chromosome,AnnotatedSnpCopyNumberSet-method	AnnotatedSnpCopyNumberSet-class
chromosome,AnnotatedSnpSet-method	AnnotatedSnpSet-class
chromosome,oligoSnpSet-method	chromosome
chromosome,SnpCallSet-method	chromosome
chromosome,SnpCopyNumberSet-method	chromosome
chromosome-methods	chromosome
chromosomeAnnotation	chromosomeAnnotation
chromosomeAnnotation,AnnotatedSnpCallSet-method	AnnotatedSnpCallSet-class
chromosomeAnnotation,AnnotatedSnpCopyNumberSet-method	AnnotatedSnpCopyNumberSet-class
chromosomeAnnotation,AnnotatedSnpSet-method	AnnotatedSnpSet-class
chromosomeAnnotation<-	chromosomeAnnotation
chromosomeAnnotation<-,AnnotatedSnpCallSet,data.frame-method	AnnotatedSnpCallSet-class
chromosomeAnnotation<-,AnnotatedSnpCopyNumberSet,data.frame-method	AnnotatedSnpCopyNumberSet-class
chromosomeAnnotation<-,AnnotatedSnpSet,data.frame-method	AnnotatedSnpSet-class
chromosomeSize	chromosomeSize
coerce,AnnotatedSnpCopyNumberSet,AnnotatedSnpSet-method	AnnotatedSnpCopyNumberSet-class
coerce,AnnotatedSnpSet,AnnotatedSnpCopyNumberSet-method	AnnotatedSnpSet-class
coerce,oligoSnpSet,AnnotatedSnpSet-method	coerce-methods
coerce-methods	coerce-methods
copyNumber,SnpQSet-method	copyNumber
copyNumber-methods	copyNumber
cytoband	cytoband
dbSnpId	dbSnpId
dbSnpId,AnnotatedDataFrame-method	dbSnpId
dbSnpId,AnnotatedSnpCopyNumberSet-method	AnnotatedSnpCopyNumberSet-class
dbSnpId,AnnotatedSnpSet-method	AnnotatedSnpSet-class
dbSnpId,oligoSnpSet-method	dbSnpId
dbSnpId,SnpCallSet-method	dbSnpId
dbSnpId,SnpCopyNumberSet-method	dbSnpId
enzyme	enzyme
enzyme,AnnotatedDataFrame-method	enzyme
enzyme,AnnotatedSnpCopyNumberSet-method	AnnotatedSnpCopyNumberSet-class
enzyme,AnnotatedSnpSet-method	AnnotatedSnpSet-class
enzyme,oligoSnpSet-method	enzyme
enzyme,SnpCallSet-method	enzyme
enzyme,SnpCopyNumberSet-method	enzyme
fData	fData
fData,AnnotatedSnpSet-method	AnnotatedSnpSet-class
fData,eSet-method	fData
fData<-	fData
fData<-,eSet,data.frame-method	fData
fragmentLength	fragmentLength
fragmentLength,AnnotatedDataFrame-method	fragmentLength
fragmentLength,AnnotatedSnpCopyNumberSet-method	AnnotatedSnpCopyNumberSet-class
fragmentLength,AnnotatedSnpSet-method	AnnotatedSnpSet-class
getSnpAnnotation	getSnpAnnotation
getSnpAnnotation,eSet-method	getSnpAnnotation
hapmap	hapmap
initialize,AnnotatedSnpCallSet-method	initialize-methods
initialize,AnnotatedSnpCopyNumberSet-method	initialize-methods
initialize,AnnotatedSnpSet-method	initialize-methods
initialize,AnnotatedSnpSetList-method	initialize-methods
initialize,oligoSnpSet-method	initialize-methods
initialize,SnpCallSet-method	initialize-methods
initialize,SnpCopyNumberSet-method	initialize-methods
initialize-methods	initialize-methods
plotCytoband	plotCytoband
plotCytoband,AnnotatedSnpSet-method	AnnotatedSnpSet-class
plotSnp	plotSnp
plotSnp,AnnotatedSnpCopyNumberSet-method	AnnotatedSnpCopyNumberSet-class
plotSnp,AnnotatedSnpSet-method	AnnotatedSnpSet-class
position	position
position,AnnotatedDataFrame-method	position
position,AnnotatedSnpCopyNumberSet-method	AnnotatedSnpCopyNumberSet-class
position,AnnotatedSnpSet-method	AnnotatedSnpSet-class
position,oligoSnpSet-method	position
position,SnpCallSet-method	position
position,SnpCopyNumberSet-method	position
show,AnnotatedSnpSet-method	show-methods
show-methods	show-methods
showSummary	showSummary
smoothSnp	smoothSnp
smoothSnp,AnnotatedSnpSet-method	AnnotatedSnpSet-class
summary,AnnotatedSnpSet-method	summary-methods
summary,ANY-method	summary-methods
summary,SnpCallSet-method	summary-methods
summary-methods	summary-methods
unsplitS4	unsplitS4
