Entry: copa
Aliases: copa
Keywords: univar
Description: Calculate COPA Scores from a Set of Microarrays
URL: ../../../library/copa/html/copa.html

Entry: copa-package
Aliases: copa-package
Keywords: package
Description: copa - A package to compute 'Cancer Outlier Profile Analysis'
URL: ../../../library/copa/html/copa.package.html

Entry: copaFilter
Aliases: copaFilter do.copaFilter copaFilter-methods copaFilter, matrix-method copaFilter, data.frame-method copaFilter, exprSet-method copaFilter, ExpressionSet-method
Keywords: internal
Description: Pre-filter Genes for COPA Analysis
URL: ../../../library/copa/html/copaFilter.html

Entry: copaPerm
Aliases: copaPerm
Keywords: manip
Description: Measure Significance of COPA by Permutation
URL: ../../../library/copa/html/copaPerm.html

Entry: tableCopa
Aliases: tableCopa
Keywords: manip
Description: Summarize copa results
URL: ../../../library/copa/html/copaTable.html

Entry: getans
Aliases: getans
Keywords: internal
Description: Interactive Function
URL: ../../../library/copa/html/getans.html

Entry: pSum
Aliases: pSum
Keywords: internal
Description: Compute all pairwise sums
URL: ../../../library/copa/html/pSum.html

Entry: perm.mat
Aliases: perm.mat
Keywords: internal
Description: Produce a Matrix of Permuted Classlabels
URL: ../../../library/copa/html/perm.mat.html

Entry: plotCopa
Aliases: plotCopa
Keywords: hplot
Description: Plot Gene Pairs fom the Results of Running copa
URL: ../../../library/copa/html/plotCopa.html

Entry: scatterPlotCopa
Aliases: scatterPlotCopa
Keywords: hplot
Description: Create scatterplots of interesting gene pairs
URL: ../../../library/copa/html/scatterPlotCopa.html
