pdfChromosomesSmoothCopyNumber package:beadarraySNP R Documentation

_r_e_p_o_r_t_W_r_a_p_p_e_r_s

_D_e_s_c_r_i_p_t_i_o_n:

     Functions that help create pdf reports

_U_s_a_g_e:

     pdfChromosomesSmoothCopyNumber(object, filename, ...)
     pdfSamplesSmoothCopyNumber(object, filename, ...)

_A_r_g_u_m_e_n_t_s:

  object: SnpSetIllumina object

filename: filename of output pdf file

     ...: arguments for report functions

_D_e_t_a_i_l_s:

     These functions set up and perfom reporting to pdf files.

_V_a_l_u_e:

     This function is used for its side effects

_A_u_t_h_o_r(_s):

     Jan Oosting

_S_e_e _A_l_s_o:

     'reportChromosomesSmoothCopyNumber',
     'reportSamplesSmoothCopyNumber'

_E_x_a_m_p_l_e_s:

       ## Not run: data(chr17.260)
       ## Not run: data.nrm<-standardNormalization(chr17.260)
       ## Not run: pdfChromosomesSmoothCopyNumber(data.nrm, "Chr17.pdf", grouping=pData(data.nrm)$Group,smooth.lambda=4)

