arrayID	arrayType
arrayID,QCIllumina-method	QCIllumina-class
arrayID<-	arrayType
arrayID<-,QCIllumina-method	QCIllumina-class
arrayType	arrayType
arrayType,QCIllumina-method	QCIllumina-class
arrayType<-	arrayType
arrayType<-,QCIllumina-method	QCIllumina-class
backgroundCorrect.SNP	backgroundCorrect.SNP
backgroundEstimate	backgroundEstimate
calculateQCarray	calculateQCarray
chr17.260	Datasets
class:SnpSetIllumina	class.SnpSetIllumina
combine,SnpSetIllumina,ANY-method	class.SnpSetIllumina
combine,SnpSetIllumina,SnpSetIllumina-method	class.SnpSetIllumina
compareGenotypes	compareGenotypes
exprs,SnpSetIllumina-method	class.SnpSetIllumina
exprs<-,SnpSetIllumina,matrix-method	class.SnpSetIllumina
featureData,SnpSetIllumina-method	class.SnpSetIllumina
featureData<-,SnpSetIllumina-method	class.SnpSetIllumina
heterozygosity	heterozygosity
heterozygousSNPs	heterozygousSNPs
initialize,QCIllumina-method	QCIllumina-class
initialize,SnpSetIllumina-method	class.SnpSetIllumina
normalizeBetweenAlleles.SNP	normalizeBetweenAlleles.SNP
normalizeLoci.SNP	normalizeLoci.SNP
normalizeWithinArrays.SNP	normalizeWithinArrays.SNP
pdfChromosomesSmoothCopyNumber	pdfChromosomesSmoothCopyNumber
pdfQC	pdfQC
pdfSamplesSmoothCopyNumber	pdfChromosomesSmoothCopyNumber
plotQC	plotQC
plotQC,QCIllumina-method	QCIllumina-class
polar2RG	PolarTransforms
QC.260	Datasets
QCIllumina-class	QCIllumina-class
read.SnpSetIllumina	read.SnpSetIllumina
removeLowQualityProbes	removeLowQualityProbes
removeLowQualitySamples	removeLowQualitySamples
reportChromosomesSmoothCopyNumber	GenomicReports
reporterInfo,SnpSetIllumina-method	class.SnpSetIllumina
reporterInfo<-,SnpSetIllumina,data.frame-method	class.SnpSetIllumina
reportSamplePanelQC	reportSamplePanelQC-methods
reportSamplePanelQC,QCIllumina-method	reportSamplePanelQC-methods
reportSamplePanelQC-methods	reportSamplePanelQC-methods
reportSamplesSmoothCopyNumber	GenomicReports
RG2polar	PolarTransforms
SnpSetIllumina	class.SnpSetIllumina
SnpSetIllumina-class	class.SnpSetIllumina
standardNormalization	standardNormalization
[,SnpSetIllumina-method	class.SnpSetIllumina
