QCIllumina-class        Class "QCIllumina"
RG2polar                Polar transformations
SnpSetIllumina          Class to Contain Objects Describing
                        High-Throughput SNP Assays.
arrayType               Accessor methods for QC objects
backgroundCorrect.SNP   Background correction
backgroundEstimate      Estimate background intensities from foreground
                        intensity
calculateQCarray        Retrieve QC information from a SnpSetIllumina
                        object
chr17.260               Illumina example data
compareGenotypes        Compare genotypes
heterozygosity          Find regions of homozygous SNPs
heterozygousSNPs        Retrieve heterozygous SNPs
normalizeBetweenAlleles.SNP
                        between Allele normalization
normalizeLoci.SNP       locus normalization
normalizeWithinArrays.SNP
                        within Array normalization
pdfChromosomesSmoothCopyNumber
                        reportWrappers
pdfQC                   QCreport
plotQC                  Spatial plots of array QC information
read.SnpSetIllumina     Read Experimental Data and into an
                        'SnpSetIllumina' Object
removeLowQualityProbes
                        Quality control of SnpSetIllumina objects
removeLowQualitySamples
                        Quality control of SnpSetIllumina objects
reportChromosomesSmoothCopyNumber
                        Genomic reports
reportSamplePanelQC-methods
                        reportSamplePanelQC
standardNormalization   Default complete normalization
