Entry: SD
Aliases: SD tableSD affycomp.figure7 affycomp.compfig7
Keywords: manip
Description: SD Assessment Functions
URL: ../../../library/affycomp/html/SD.html

Entry: affycomp.compfigs.auxiliary
Aliases: affycomp.compfigs.auxiliary affycomp.compfig2 affycomp.compfig2b affycomp.compfig3 affycomp.compfig4a affycomp.compfig4b affycomp.compfig4c affycomp.compfig5a affycomp.compfig5b affycomp.compfig5cde affycomp.compfig5c affycomp.compfig5d affycomp.compfig5e
Keywords: hplot
Description: Auxiliary functions to create comparitive Figures
URL: ../../../library/affycomp/html/affycomp.compfigs.auxiliary.html

Entry: affycomp.figures.auxiliary
Aliases: affycomp.figures.auxiliary affycomp.figure1 affycomp.figure1b affycomp.figure2 affycomp.figure2b affycomp.figure3 affycomp.figure4a affycomp.figure4b affycomp.figure4c affycomp.figure5a affycomp.figure5b affycomp.figure5c affycomp.figure5d affycomp.figure5e affycomp.figure6a affycomp.figure6b
Keywords: hplot
Description: Auxiliary functions to create Figures
URL: ../../../library/affycomp/html/affycomp.figures.auxiliary.html

Entry: affycompTable
Aliases: affycompTable tableAll tableDilution tableFC tableFC2 tableSignal tableOverallSNR tableRanks tableLS tableMA2 tableSpikeInSD
Keywords: manip
Description: Expression Assessment Table
URL: ../../../library/affycomp/html/affycomp.table.html

Entry: affycompPlot
Aliases: affycompPlot affycomp.figure.calls affycomp.compfigs.calls affycomp.figures affycomp.compfigs
Keywords: hplot
Description: Assessment Plots
URL: ../../../library/affycomp/html/affycompPlot.html

Entry: assessAll
Aliases: assessAll affycomp
Keywords: manip
Description: Assessment functions
URL: ../../../library/affycomp/html/assessAll.html

Entry: assessDilution
Aliases: assessDilution
Keywords: manip
Description: Assessment functions for Dilution Data
URL: ../../../library/affycomp/html/assessDilution.html

Entry: assessSD
Aliases: assessSD
Keywords: manip
Description: SD Assessment functions
URL: ../../../library/affycomp/html/assessSD.html

Entry: assessSpikeIn
Aliases: assessSpikeIn assessFC assessFC2 assessMA assessSignal
Keywords: manip
Description: Assessment functions for Spike In Data
URL: ../../../library/affycomp/html/assessSpikeIn.html

Entry: assessSpikeIn2
Aliases: assessSpikeIn2 assessSpikeInSD assessLS assessMA2
Keywords: manip
Description: New Assessment functions for Spike In Data
URL: ../../../library/affycomp/html/assessSpikeIn2.html

Entry: dilution.phenodata
Aliases: dilution.phenodata
Keywords: datasets
Description: Phenotypic Information for Dilution Study
URL: ../../../library/affycomp/html/dilution.phenodata.html

Entry: exprset.log
Aliases: exprset.log
Keywords: manip
Description: Take log base 2 of Expression
URL: ../../../library/affycomp/html/exprset.log.html

Entry: hgu133a.spikein.phenodata
Aliases: hgu133a.spikein.phenodata
Keywords: datasets
Description: phenotypic information for HGU133A spike in study
URL: ../../../library/affycomp/html/hgu133a.spikein.phenodata.html

Entry: lw.sd.assessment
Aliases: lw.sd.assessment
Keywords: datasets
Description: An example of the result of an SD assessment
URL: ../../../library/affycomp/html/lw.sd.assessment.html

Entry: mas5.assessment
Aliases: mas5.assessment mas5.assessment.133 mas5.assessment2 mas5.assessment2.133
Keywords: datasets
Description: An example of the result of the assessments
URL: ../../../library/affycomp/html/mas5.assessment.html

Entry: readin
Aliases: readin read.spikein read.newspikein read.dilution
Keywords: manip
Description: Read Expression Date Sets
URL: ../../../library/affycomp/html/readin.html

Entry: remove.hgu133a.xhyb
Aliases: remove.hgu133a.xhyb
Keywords: manip
Description: Remove crosshybridizers
URL: ../../../library/affycomp/html/remove.hgu133a.xhyb.html

Entry: rma.assessment
Aliases: rma.assessment rma.assessment.133 rma.assessment2 rma.assessment2.133
Keywords: datasets
Description: An example of the result of an assessment
URL: ../../../library/affycomp/html/rma.assessment.html

Entry: rma.sd.assessment
Aliases: rma.sd.assessment
Keywords: datasets
Description: An example of the result of an SD assessment
URL: ../../../library/affycomp/html/rma.sd.assessment.html

Entry: spikein.phenodata
Aliases: spikein.phenodata
Keywords: datasets
Description: phenotypic information for spike in study
URL: ../../../library/affycomp/html/spikein.phenodata.html

Entry: hgu133a.spikein.xhyb
Aliases: hgu133a.spikein.xhyb
Keywords: datasets
Description: Cross hybridizers
URL: ../../../library/affycomp/html/xhyb.html
