add.lines	MANOR-internal
amplicon.flag	flags
arrayCGH2txt	MANOR-internal
arrayTrend	arrayTrend
arrayTrend.arrayCGH	arrayTrend
arrayTrend.default	arrayTrend
center	MANOR-internal
check.names	MANOR-internal
chrom	MANOR-internal
chromosome.flag	flags
clone.qscore	qscores
control.flag	flags
cv	MANOR-internal
dapi.snr.flag	flags
detectSB	detectSB
detectSB.arrayCGH	detectSB
detectSB.default	detectSB
dyn.x.qscore	qscores
dyn.y.qscore	qscores
dynamics.qscore	qscores
edge	spatial
edge.norm	spatial
edge.txt	spatial
flag	flag
flag.aggregate.arrayCGH	MANOR-internal
flag.arrayCGH	flag.arrayCGH
flag.summary	flag.summary
flag.summary.arrayCGH	flag.summary
flag.summary.default	flag.summary
flags	flags
genome.plot	genome.plot
genome.plot.arrayCGH	genome.plot
genome.plot.default	genome.plot
global.spatial.flag	flags
gradient	spatial
gradient.gpr	spatial
gradient.norm	spatial
html.report	html.report
html.report.arrayCGH	html.report
html.report.default	html.report
import	import
import.default.aux	import
import.gpr.aux	import
import.spot.aux	import
local.spatial.flag	flags
MANOR	norm.arrayCGH
manor	norm.arrayCGH
MANOR-internal	MANOR-internal
my.aggregate.data.frame	MANOR-internal
nem	nem
nem.arrayCGH	nem
nem.default	nem
norm.arrayCGH	norm.arrayCGH
num.chromosome.flag	MANOR-internal
pct.clone.qscore	qscores
pct.replicate.qscore	qscores
pct.spot.qscore	qscores
position.flag	flags
print.flag	MANOR-internal
qscore	qscore
qscore.arrayCGH	qscore.arrayCGH
qscore.summary	qscore.summary
qscore.summary.arrayCGH	qscore.summary
ref.snr.flag	flags
rename	MANOR-internal
rep.flag	flags
replicate.aux	MANOR-internal
replicate.flag	flags
report.plot	report.plot
report.plot.arrayCGH	report.plot
report.plot.default	report.plot
smoothness.qscore	qscores
SNR.flag	flags
sort.arrayCGH	sort.arrayCGH
spatial	spatial
spatial.flag	flags
spot.corr.flag	MANOR-internal
spot.flag	flags
to.flag	flag
to.qscore	qscore
unique.flag	flags
val.mark.flag	flags
var.replicate.qscore	qscores
w	MANOR-internal
