cViz                package:ChromoViz                R Documentation

_M_a_i_n _f_u_n_c_t_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     ChromoViz main function

_U_s_a_g_e:

     cViz(feature, bandPosFile, refSp = "human")

_A_r_g_u_m_e_n_t_s:

 feature: gene expression 

bandPosFile: band position  

   refSp: the name of species 

_D_e_t_a_i_l_s:

     A wrapper html report, index.html, is generated.

_V_a_l_u_e:

     An index.html is generated incorporating individual chromosome
     html with SVG figures.

_A_u_t_h_o_r(_s):

     Jihoon Kim <jihoon@stat.wisc.edu>

_R_e_f_e_r_e_n_c_e_s:

     Kim et al.  ChromoViz: multimodal visualization of gene expression
     data onto chromosome using scalable vector graphics,
     Bioinformatics, May 1:1191-2, 2004

_E_x_a_m_p_l_e_s:

     #library( ChromoViz )
     #
     #Onto human chromosome
     #data( exprStemcell )
     #data( humanBand )
     #SET OUTPUT DIRECTORY  ex>  setwd("C:\temp") 
     #cViz( exprStemcell, humanBand, refSp="human")

