!=,ANY,BString-method	BString-class
!=,ANY,BStringViews-method	BStringViews-class
!=,bbuf,bbuf-method	Biostrings-internals
!=,BString,ANY-method	BString-class
!=,BString,BStringViews-method	BStringViews-class
!=,BStringViews,ANY-method	BStringViews-class
!=,BStringViews,BString-method	BStringViews-class
!=,ibuf,ibuf-method	Biostrings-internals
==,ANY,BString-method	BString-class
==,ANY,BStringViews-method	BStringViews-class
==,bbuf,bbuf-method	Biostrings-internals
==,BString,ANY-method	BString-class
==,BString,BStringViews-method	BStringViews-class
==,BStringViews,ANY-method	BStringViews-class
==,BStringViews,BString-method	BStringViews-class
==,ibuf,ibuf-method	Biostrings-internals
adjacentViews	BStringViews-class
alignScore	needwunsQS
alignScore.needwunsQS	needwunsQS
alphabetFrequency	alphabetFrequency
alphabetFrequency,BString-method	alphabetFrequency
alphabetFrequency,BStringViews-method	alphabetFrequency
alphabetFrequency,DNAString-method	alphabetFrequency
alphabetFrequency,RNAString-method	alphabetFrequency
as.character,BString-method	BString-class
as.character,BStringViews-method	BStringViews-class
as.list,BStringViews-method	BStringViews-class
as.matrix,BStringViews-method	BStringViews-class
bbuf	Biostrings-internals
bbuf-class	Biostrings-internals
blosum50	blosum50
BString	BString-class
BString-class	BString-class
BStringCodec	Biostrings-internals
BStringCodec-class	Biostrings-internals
BStringViews	BStringViews-class
BStringViews,BString-method	BStringViews-class
BStringViews,BStringViews-method	BStringViews-class
BStringViews,file-method	BStringViews-class
BStringViews-class	BStringViews-class
cbuf	Biostrings-internals
cbuf-class	Biostrings-internals
class:bbuf	Biostrings-internals
class:BString	BString-class
class:BStringCodec	Biostrings-internals
class:BStringViews	BStringViews-class
class:cbuf	Biostrings-internals
class:DNAString	BString-class
class:ibuf	Biostrings-internals
class:RNAString	BString-class
complement	reverseComplement
complement,BStringViews-method	reverseComplement
complement,DNAString-method	reverseComplement
countPattern	matchPattern
countPattern,ANY,BString-method	matchPattern
countPattern,ANY,BStringViews-method	matchPattern
countPattern,ANY,character-method	matchPattern
debug_bbuf	Biostrings-internals
debug_shiftor	Biostrings-internals
debug_utils	Biostrings-internals
desc	BStringViews-class
desc,BStringViews-method	BStringViews-class
DNAString	BString-class
DNAString-class	BString-class
first	BStringViews-class
first,BStringViews-method	BStringViews-class
ibuf	Biostrings-internals
ibuf-class	Biostrings-internals
initialize,bbuf-method	Biostrings-internals
initialize,BString-method	BString-class
initialize,BStringCodec-method	Biostrings-internals
initialize,BStringViews-method	BStringViews-class
initialize,DNAString-method	BString-class
initialize,ibuf-method	Biostrings-internals
initialize,RNAString-method	BString-class
last	BStringViews-class
last,BStringViews-method	BStringViews-class
length,bbuf-method	Biostrings-internals
length,BString-method	BString-class
length,BStringViews-method	BStringViews-class
length,ibuf-method	Biostrings-internals
letter	BString-class
letter,BString-method	BString-class
matchDNAPattern	matchPattern
matchPattern	matchPattern
matchPattern,ANY,BString-method	matchPattern
matchPattern,ANY,BStringViews-method	matchPattern
matchPattern,ANY,character-method	matchPattern
mismatch	matchPattern
mismatch,ANY,BStringViews-method	matchPattern
nchar,BString-method	BString-class
nchar,BStringViews-method	BStringViews-class
needwunsQS	needwunsQS
needwunsQS,BString,character-method	needwunsQS
needwunsQS,character,BString-method	needwunsQS
needwunsQS,character,character-method	needwunsQS
print.needwunsQS	needwunsQS
readFASTA	readFASTA
reverse	reverseComplement
reverse,BString-method	reverseComplement
reverse,BStringViews-method	reverseComplement
reverseComplement	reverseComplement
reverseComplement,BStringViews-method	reverseComplement
reverseComplement,DNAString-method	reverseComplement
RNAString	BString-class
RNAString-class	BString-class
show,bbuf-method	Biostrings-internals
show,BString-method	BString-class
show,BStringViews-method	BStringViews-class
show,cbuf-method	Biostrings-internals
show,externalptr-method	Biostrings-internals
show,ibuf-method	Biostrings-internals
subBString	BString-class
subBString,BString-method	BString-class
subject	BStringViews-class
subject,BStringViews-method	BStringViews-class
toString,bbuf-method	Biostrings-internals
toString,BString-method	BString-class
toString,BStringViews-method	BStringViews-class
views	BStringViews-class
width	BStringViews-class
width,BStringViews-method	BStringViews-class
yeastSEQCHR1	yeastSEQCHR1
[,bbuf-method	Biostrings-internals
[,BString-method	BString-class
[,BStringViews-method	BStringViews-class
[,cbuf-method	Biostrings-internals
[,ibuf-method	Biostrings-internals
[<-,bbuf-method	Biostrings-internals
[<-,BString-method	BString-class
[<-,BStringViews-method	BStringViews-class
[<-,ibuf-method	Biostrings-internals
[[,BStringViews-method	BStringViews-class
[[<-,BStringViews-method	BStringViews-class
