APComEX	APComEX
applyDeformationError	applyDeformationError
applyFNErrors	applyFNErrors
applyFPErrors	applyFPErrors
applyStickyError	applyStickyError
compareComplex	compareComplex
compBijection	compBijection
compIndep	compIndep
fullSimEX	fullSimEX
JaccardCoef	JaccardCoef
missedProtEX	missedProtEX
missedProtHMSPCI	missedProtHMSPCI
PPIEX	PPIEX
recordSticky	recordSticky
runAlignment	runAlignment
runAPComplex	runAPComplex
runCompareComplex	runCompareComplex
runCompIndep	runCompIndep
runSimEX	runSimEX
runSimulators	runSimulators
simEX	simEX
simulator	simulator
simulatorD	simulatorD
simulatorS	simulatorS
TSNMatrix	TSNMatrix
vBaits	vBaits
vBaitsEX	vBaitsEX
vDeformed	vDeformed
vDeformedEX	vDeformedEX
vDeformEX	vDeformEX
vStickyEX	vStickyEX
