runCompareComplex       package:simulatorAPMS       R Documentation

_F_u_n_c_t_i_o_n _t_h_a_t _s_e_t_s _u_p _t_h_e _I_S_I _a_n_d _e_s_t_i_m_a_t_e _m_a_t_r_i_x _f_o_r _c_o_m_p_a_r_e _c_o_m_p_l_e_x

_D_e_s_c_r_i_p_t_i_o_n:

     The runCompareComplex function takes two Bipartite Graph Matrices
     and re-structures these two matrices so that reasonable
     comparisons can be made between the two matrices. For instance,
     some proteins in the ISI might not have been found in our
     experimental simulation, so this protein would not be present in
     the estimate. Here we add such a protein as a row of the estimate
     with all zeros. When the two matrices have been modified,
     compareComplexes is called on these two particular matrices.

_U_s_a_g_e:

     runCompareComplex(TSNMat, erComplex)

_A_r_g_u_m_e_n_t_s:

  TSNMat: The ISI bipartite graph matrix

erComplex: The estimate bipartite graph matrix 

_D_e_t_a_i_l_s:

     This function is called prior to Compare Complex to set up the
     preliminaries. Otherwise, the compare complex algorithm fails to
     record the true data.

_V_a_l_u_e:

     The return value of runCompareComplex is the return value of
     CompareComplex which is a list of three matrics. See
     compareComplex() for details.

_A_u_t_h_o_r(_s):

     Tony Chiang

_S_e_e _A_l_s_o:

     'compareComplex'

_E_x_a_m_p_l_e_s:

     library(simulatorAPMS)
     data(simEX)
     data(APComEX)
     runCompareComplex(simEX, APComEX)

