runAlignment          package:simulatorAPMS          R Documentation

_F_u_n_c_t_i_o_n _p_r_e_p_a_r_i_n_g _f_o_r _a_l_i_g_n_m_e_n_t

_D_e_s_c_r_i_p_t_i_o_n:

     This function takes the ISI, the estimate, either the Jaccard
     Matrix or the Kullbach-Liebler Matrix, and creates a matrix,
     called the bijMat that stores the alignment with the particular
     coefficient between the aligned complex pair from the Jaccard
     matrix or the KL-Matrix.

_U_s_a_g_e:

     runAlignment(TSNMat, estMat, c2kMat)

_A_r_g_u_m_e_n_t_s:

  TSNMat: ISI bipartite graph matrix 

  estMat: estimate bipartite graph matrix 

  c2kMat: either Jaccard or Kulbach-Liebler matrix 

_D_e_t_a_i_l_s:

     see above

_V_a_l_u_e:

     The return value is bijMat with each row marking the alignment
     pair between the ISI and the estimate with the alignment
     coefficient in the third column.

_A_u_t_h_o_r(_s):

     Tony Chiang

