Entry: boot2fuzzy
Aliases: boot2fuzzy
Keywords: cluster nonparametric multivariate
Description: function to write MapleTree files for viewing bootstrap estimated cluster membership probabilities based on hopach clustering results
URL: ../../../library/hopach/html/boot2fuzzy.html

Entry: bootplot
Aliases: bootplot
Keywords: cluster nonparametric multivariate
Description: function to make a barplot of bootstrap estimated cluster membership probabilities
URL: ../../../library/hopach/html/bootplot.html

Entry: boothopach
Aliases: boothopach bootmedoids
Keywords: cluster nonparametric multivariate
Description: functions to perform non-parametric bootstrap resampling of hopach clustering results
URL: ../../../library/hopach/html/bootstrap.html

Entry: correlationordering
Aliases: correlationordering improveordering
Keywords: multivariate cluster
Description: function to compute empirical correlation between distance in a list and distance by a metric
URL: ../../../library/hopach/html/correlationordering.html

Entry: disscosangle
Aliases: disscosangle disseuclid disscor dissabscosangle dissabseuclid dissabscor vdisscosangle vdisseuclid vdisscor vdissabscosangle vdissabseuclid vdissabscor
Keywords: multivariate internal
Description: Functions to compute pair-wise distances
URL: ../../../library/hopach/html/disscosangle.html

Entry: distancematrix
Aliases: distancematrix distancevector dissmatrix dissvector vectmatrix
Keywords: multivariate cluster
Description: functions to compute pair wise distances between vectors
URL: ../../../library/hopach/html/distancematrix.html

Entry: dplot
Aliases: dplot
Keywords: cluster multivariate
Description: function to make a pseudo-color image of a distance matrix with the row and column ordering based on HOPACH clustering results.
URL: ../../../library/hopach/html/dplot.html

Entry: golub
Aliases: golub golub.cl golub.gnames
Keywords: datasets
Description: Gene expression dataset from Golub et al. (1999)
URL: ../../../library/hopach/html/golub.html

Entry: hopach
Aliases: hopach
Keywords: cluster multivariate
Description: function to perform HOPACH hierarchical clustering
URL: ../../../library/hopach/html/hopach.html

Entry: hopach-internal
Aliases: collap cutdigits cutzeros digits msscollap msscomplete mssinitlevel mssmulticollap mssnextlevel mssrundown msssplitcluster newnextlevel newsplitcluster nonzeros orderelements paircoll
Keywords: internal cluster multivariate
Description: Functions used internally by the hopach package
URL: ../../../library/hopach/html/hopach.internal.html

Entry: hopach2tree
Aliases: hopach2tree makeTree
Keywords: cluster multivariate
Description: function to write MapleTree files for viewing hopach hierarchical clustering results
URL: ../../../library/hopach/html/hopach2tree.html

Entry: labelstomss
Aliases: labelstomss labelstosil medstosil msscheck silcheck
Keywords: cluster multivariate
Description: Functions to compute silhouettes and split silhouettes
URL: ../../../library/hopach/html/labelstomss.html

Entry: makeoutput
Aliases: makeoutput
Keywords: cluster nonparametric multivariate
Description: function to write a text file with hopach output
URL: ../../../library/hopach/html/makeoutput.html

Entry: prune
Aliases: prune
Keywords: cluster multivariate
Description: function to prune a HOPACH tree.
URL: ../../../library/hopach/html/prune.html
