SD                 package:affycomp                 R Documentation

_S_D _A_s_s_e_s_s_m_e_n_t _F_u_n_c_t_i_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     These functions create assessments, figures, and tables for
     expression standard errors

_U_s_a_g_e:

     affycomp.figure7(l,main="Figure 7")
     affycomp.compfig7(l,method.names=as.character(1:length(l)),
                       main="Figure 7")
     tableSD(l,method.names=NULL)

_A_r_g_u_m_e_n_t_s:

       l: a list of lists with the necessary components to create the
          Figure. See details.

method.names: a character vector with the names of the expression
          measures methodologies being compared. 

    main: title of the Figure.

_D_e_t_a_i_l_s:

     This uses the dilution data. The exprsets need to have standard
     error estimates in the 'se.exprs' slot. Read the vignette for more
     details. The functions work similarly to those assessing
     expression measures.

     All these files need the result of 'assessSD'

_V_a_l_u_e:

     Depends on the call.

_A_u_t_h_o_r(_s):

     Rafael A. Irizarry

_E_x_a_m_p_l_e_s:

     data(rma.sd.assessment) ##this was produced with affycomp.assess
     data(lw.sd.assessment) ##this one too
     affycomp.compfig7(list(rma.sd.assessment,lw.sd.assessment))
     affycomp.figure7(rma.sd.assessment)

