Entry: GeneR
Aliases: GeneR
Keywords: utilities
Description: Overview of GeneR package
URL: ../../../library/GeneR/html/01GeneR.html

Entry: Globals Variables
Aliases: globals
Keywords: utilities
Description: Globals variables on Gene sequences
URL: ../../../library/GeneR/html/02globals.html

Entry: AllOrfs
Aliases: allOrfs maxOrf
Keywords: utilities
Description: Get ORFs from a sequence
URL: ../../../library/GeneR/html/Allorf.html

Entry: AtoR
Aliases: AtoR AtoT RtoA RtoT TtoA TtoR
Keywords: utilities
Description: Conversion of addresses
URL: ../../../library/GeneR/html/AtoR.html

Entry: Assemble
Aliases: assemble
Keywords: utilities
Description: Create a sequence by gathering parts a sequence
URL: ../../../library/GeneR/html/assemble.html

Entry: CompoSeq
Aliases: compoSeq strCompoSeq
Keywords: utilities
Description: Composition in mono, di or trinucleotides of a sequence
URL: ../../../library/GeneR/html/compos.seq.html

Entry: Concat
Aliases: concat
Keywords: utilities
Description: Concatenate two sequences into a third one
URL: ../../../library/GeneR/html/concat.html

Entry: DnaToRna
Aliases: dnaToRna rnaToDna
Keywords: utilities
Description: Transformation from T to U in a sequence, and the reverse
URL: ../../../library/GeneR/html/dna.rna.html

Entry: ExactWord
Aliases: exactWord
Keywords: utilities
Description: Look for motifs in a sequence
URL: ../../../library/GeneR/html/exact.word.html

Entry: FastaDescription
Aliases: fastaDescription
Keywords: utilities
Description: Read the description field from a fasta file
URL: ../../../library/GeneR/html/fasta.descript.html

Entry: FreeAllSeq
Aliases: freeAllSeq
Keywords: utilities
Description: Free all sequences
URL: ../../../library/GeneR/html/free.all.seq.html

Entry: FreeSeq
Aliases: freeSeq
Keywords: utilities
Description: Free one sequence
URL: ../../../library/GeneR/html/free.seq.html

Entry: GetAccn
Aliases: getAccn getBegSeq getEndSeq getSeqSize getStrand
Keywords: utilities
Description: Return globals variables of a sequence
URL: ../../../library/GeneR/html/getAccn.html

Entry: GetParam
Aliases: getParam
Keywords: utilities
Description: Give global variables associated to a sequence
URL: ../../../library/GeneR/html/getParam.html

Entry: GetSeq
Aliases: multiExtract getSeq strMultiExtract
Keywords: utilities
Description: Extract regions from a sequence
URL: ../../../library/GeneR/html/getseq.html

Entry: IndexFasta
Aliases: indexFasta indexEmbl indexGbk
Keywords: utilities
Description: Create an index for a fasta,embl,gbk file
URL: ../../../library/GeneR/html/indexfasta.html

Entry: InsertSeq
Aliases: insertSeq
Keywords: utilities
Description: Insert a sequence in another sequence
URL: ../../../library/GeneR/html/insert.html

Entry: MakeIndex
Aliases: makeIndex
Keywords: utilities
Description: Make an index for a bank file
URL: ../../../library/GeneR/html/makeIndex.html

Entry: ParamFromIndex
Aliases: paramFromIndex
Keywords: utilities
Description: Extract parameters from an index file
URL: ../../../library/GeneR/html/paramFromIndex.html

Entry: PlaceString
Aliases: placeString
Keywords: utilities
Description: Put a character string into a sequence buffer.
URL: ../../../library/GeneR/html/placestring.html

Entry: posMaskedSeq
Aliases: posMaskedSeq
Keywords: utilities
Description: Get all masked regions
URL: ../../../library/GeneR/html/posMaskedSeq.html

Entry: Read location
Aliases: readGbkLocation readEmblLocation
Keywords: utilities database
Description: Get features from a GeneBank file
URL: ../../../library/GeneR/html/read.gbk.location.html

Entry: ReadSeq
Aliases: readSeq readFasta readGbk readEmbl strReadFasta strReadGbk strReadEmbl
Keywords: utilities
Description: Read a sequence from a Fasta, Embl or GeneBank file.
URL: ../../../library/GeneR/html/readseq.html

Entry: Reverse complementary
Aliases: revComp strComp
Keywords: utilities
Description: Performs the reverse of a sequence
URL: ../../../library/GeneR/html/revcomp.html

Entry: SeqSize
Aliases: seqSize
Keywords: utilities
Description: Size of all sequence buffers
URL: ../../../library/GeneR/html/seqsize.html

Entry: SeqUrl
Aliases: seqUrl seqNcbi
Keywords: utilities
Description: Download a sequence in Fasta / Genbank / Embl format from Ncbi or Srs
URL: ../../../library/GeneR/html/sequrl.html

Entry: SetAccn
Aliases: setAccn setEndSeq setBegSeq setSeqSize setStrand
Keywords: utilities
Description: Set globals variables of a sequence
URL: ../../../library/GeneR/html/setAccn.html

Entry: SetParam
Aliases: setParam
Keywords: utilities
Description: Set global variables associated to a sequence
URL: ../../../library/GeneR/html/setParam.html

Entry: SizeSeq
Aliases: sizeSeq
Keywords: utilities
Description: Size of a sequence in a bufseq
URL: ../../../library/GeneR/html/sizeseq.html

Entry: SizeSeqFasta
Aliases: sizeSeqFasta sizeSeqGbk sizeSeqEmbl
Keywords: utilities
Description: Size of a sequence from a fasta/embl/gbk file
URL: ../../../library/GeneR/html/sizeseqfasta.html

Entry: Str2ascii
Aliases: str2ascii
Keywords: utilities
Description: Convert a string in its ascii code
URL: ../../../library/GeneR/html/str2ascii.html

Entry: Translation
Aliases: translate strTranslate showTable
Keywords: utilities
Description: Translation from DNA trinucleotides to proteine
URL: ../../../library/GeneR/html/translation.html

Entry: WriteFasta
Aliases: writeFasta
Keywords: utilities
Description: Write sequences into fasta file format
URL: ../../../library/GeneR/html/write.fasta.html

Entry: WriteEmblSeq
Aliases: writeEmblLine writeEmblComment writeEmblSeq
Keywords: utilities
Description: Write to Embl file
URL: ../../../library/GeneR/html/writeEMBL.html
