ParamFromIndex             package:GeneR             R Documentation

_E_x_t_r_a_c_t _p_a_r_a_m_e_t_e_r_s _f_r_o_m _a_n _i_n_d_e_x _f_i_l_e

_D_e_s_c_r_i_p_t_i_o_n:

     Gets values from an index file to a specific access number

_U_s_a_g_e:

     paramFromIndex(accn, indexpath)

_A_r_g_u_m_e_n_t_s:

    accn: Access number (name) of sequence 

indexpath: Name of index file

_V_a_l_u_e:

     A list, with values: 

   accno: acces number

indexpath: index file

beginFeatures: Position of the begining of features

beginSeq: Position of the begining of sequence

    size: Length of sequence (in the file) or -1 if error

_S_e_e _A_l_s_o:

     'readSeq','sizeSeqEmbl'

_E_x_a_m_p_l_e_s:

     seqNcbi("BY608190",file="BY608190.fa")
     makeIndex("BY608190.fa",type='F')
     paramFromIndex("gi|26943372|gb|BY608190.1|BY608190","BY608190.fa.ix")

