\HeaderA{read.cdf.complete}{Parsing a CDF file using Affymetrix Fusion SDK}{read.cdf.complete}
\keyword{file}{read.cdf.complete}
\begin{Description}\relax
This function parses a CDF file using the Affymetrix Fusion SDK.
\end{Description}
\begin{Usage}
\begin{verbatim}
read.cdf.complete(fname, verbose = 0)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{fname}] name of the CDF file.
\item[\code{verbose}] how verbose should the output be. 0 means no output,
with higher numbers being more verbose.
\end{ldescription}
\end{Arguments}
\begin{Details}\relax
\end{Details}
\begin{Value}
A list with one component for each unit. Every component is again a
list with three components    
\begin{ldescription}
\item[\code{groups}] This is again a list with one component for each group
(also called block). The information on each group is a list with 5
components, \code{x}, \code{y}, \code{pbase}, \code{tbase},
\code{expos}.
\item[\code{type}] type of the unit.
\item[\code{direction}] direction of the unit.
\end{ldescription}
\end{Value}
\begin{Note}\relax
\end{Note}
\begin{Author}\relax
James Bullard, \email{bullard@stat.berkeley.edu} and Kasper
Daniel Hansen, \email{khansen@stat.berkeley.edu}
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{affxparserInfo}{affxparserInfo}} for general information about the
package/Fusion SDK and \code{\LinkA{read.cdf.header}{read.cdf.header}} for getting the
header of a CDF file.
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
## Not run: 
read.cdf.complete("test.CDF")
## End(Not run)
\end{ExampleCode}
\end{Examples}

