read.affybatch2          package:affxparser          R Documentation

_R_e_a_d _C_E_L _f_i_l_e_s _i_n_t_o _a_n _A_f_f_y_b_a_t_c_h

_D_e_s_c_r_i_p_t_i_o_n:

     Read CEL files into an Affybatch. An implemetation build on the
     'affxparser' package.

_U_s_a_g_e:

     read.affybatch2(..., filenames = character(0),
                     phenoData = new("phenoData"),
                     description = NULL, notes = "",
                     compress = getOption("BioC")$affy$compress.cel,
                     rm.mask = FALSE, rm.outliers = FALSE,
                     rm.extra = FALSE, verbose = FALSE)

_A_r_g_u_m_e_n_t_s:

     ...: file names separated by comma.

filenames: file names in a character vector.

phenoData: a 'phenoData' object

description: a 'MIAME' object

   notes: notes.

compress: Not currently supported.

 rm.mask: Not currently supported.

rm.outliers: Not currently supported.

rm.extra: Not currently supported.

 verbose: verbosity flag.

_D_e_t_a_i_l_s:

_V_a_l_u_e:

     An 'AffyBatch' object.

_A_u_t_h_o_r(_s):

     The author of the original 'read.affybatch' function: Ben Bolstad,
     bolstad@stat.berkeley.edu as well as  James Bullard,
     bullard@stat.berkeley.edu and Kasper Daniel Hansen
     khansen@stat.berkeley.edu

_S_e_e _A_l_s_o:

     'read.affybatch' in 'affy' as well as 'read.cel.intensities' and
     'read.cel.complete'.

_E_x_a_m_p_l_e_s:

