melon {wateRmelon} | R Documentation

## Small MethyLumi data set for examples and testing

### Description

This object was derived using `methylumiR` on an edited GenomeStudio file containing a small subset of features. It works with all of the wateRmelon package beta functions (see `dasen` and metrics (see `genki`, `seabi`, and `dmrse_col`) except for `swan`.

### Usage

    data(melon)

### Format

MethyLumiSet with assayData containing 3363 features, 12 samples

### Source

Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data (submitted)

### Examples

    library(methylumi)
    data(melon)
    boxplot(log(methylated(melon)), las=2)
    ## maybe str(melon) ; plot(melon) ...

[Package wateRmelon version 1.28.0 Index]