shuffle_motifs {universalmotif} | R Documentation

## Shuffle motifs by column.

### Description

Given a set of motifs, shuffle the columns between them. Currently does not support keeping the 'multifreq' slot. Only the 'bkg', 'nsites', 'strand', and 'bkgsites' slots will be preserved. Uses the same shuffling methods as `shuffle_sequences()`. When shuffling more than one motif, they are shuffled together.

### Usage

    shuffle_motifs(motifs, k = 2, method = "linear", leftovers = "asis")

### Arguments

`motifs` | See `convert_motifs()` for acceptable formats.
`k` | `numeric(1)` K-let size.
`method` | `character(1)` One of `c('linear', 'random')`. Only relevant if `k > 1`. See details. The `'random'` method will be removed in the next minor version.
`leftovers` | `character(1)` For `method = 'random'`. One of `c('asis', 'first', 'split', 'discard')`. See details.

### Value

Motifs. See `convert_motifs()` for available output formats.

### Author(s)

Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca

### See Also

`shuffle_sequences()`

[Package universalmotif version 1.2.1 Index]