Trena-class {trena} | R Documentation

## Define an object of class Trena

### Description

The Trena class provides a convenient wrapper for the most commonly used filters and solver in the `trena` package. Given a particular genome (one of `c("hg38","mm10")`, the Trena class provides methods to retrieve information about possible regulators for a target gene, assess the effects of SNPs, and create gene models using the flexible `EnsembleSolver` class.

### Usage

    Trena(genomeName, quiet = TRUE)

### Arguments

`genomeName` | A string indicating the genome used by the Trena object. Currently, only human and mouse ( "hg38","mm10") are supported
`quiet` | A logical indicating whether or not the Trena object should print output

### Value

An object of the Trena class

### See Also

`getRegulatoryChromosomalRegions`, `getRegulatoryTableColumnNames`, `getGeneModelTableColumnNames`, `createGeneModelFromRegulatoryRegions`, `createGeneModelFromTfList`

### Examples

    # Create a Trena object using the human hg38 genome
    trena <- Trena("hg38")

[Package trena version 1.6.1 Index]