# Generated by roxygen2: do not edit by hand

S3method(MRCA,phylo)
S3method(MRCA,treedata)
S3method(Nnode,treedata)
S3method(Ntip,treedata)
S3method(ancestor,phylo)
S3method(as.phylo,data.frame)
S3method(as.phylo,ggtree)
S3method(as.phylo,matrix)
S3method(as.phylo,phylo4)
S3method(as.phylo,tbl_df)
S3method(as.treedata,data.frame)
S3method(as.treedata,ggtree)
S3method(as.treedata,matrix)
S3method(as.treedata,phylo)
S3method(as.treedata,phylo4)
S3method(as.treedata,phylo4d)
S3method(as.treedata,tbl_df)
S3method(child,phylo)
S3method(full_join,treedata)
S3method(get.placements,jplace)
S3method(groupClade,phylo)
S3method(groupClade,treedata)
S3method(groupOTU,phylo)
S3method(groupOTU,treedata)
S3method(is.rooted,treedata)
S3method(isTip,phylo)
S3method(isTip,tbl_tree)
S3method(isTip,treedata)
S3method(offspring,phylo)
S3method(parent,phylo)
S3method(print,beastList)
S3method(root,phylo)
S3method(root,treedata)
S3method(rootnode,phylo)
S3method(sibling,phylo)
S3method(tree_subset,phylo)
S3method(tree_subset,treedata)
export("%>%")
export(MRCA)
export(Nnode)
export(Nnode2)
export(Ntip)
export(ancestor)
export(as.phylo)
export(as.treedata)
export(child)
export(data_frame)
export(drop.tip)
export(full_join)
export(get.data)
export(get.fields)
export(get.placements)
export(get.tree)
export(get.treetext)
export(getNodeNum)
export(is.ggtree)
export(is.rooted)
export(isTip)
export(label_branch_paml)
export(mask)
export(merge_tree)
export(offspring)
export(parent)
export(phyPML)
export(raxml2nwk)
export(read.astral)
export(read.beast)
export(read.codeml)
export(read.codeml_mlc)
export(read.fasta)
export(read.hyphy)
export(read.hyphy.seq)
export(read.iqtree)
export(read.jplace)
export(read.jtree)
export(read.mrbayes)
export(read.newick)
export(read.nexus)
export(read.nhx)
export(read.paml_rst)
export(read.phylip)
export(read.phylip.seq)
export(read.phylip.tree)
export(read.phyloT)
export(read.r8s)
export(read.raxml)
export(read.tree)
export(rename_taxa)
export(rescale_tree)
export(rootnode)
export(rtree)
export(taxa_rename)
export(tree_subset)
export(treedata)
export(write.beast)
export(write.jplace)
export(write.jtree)
export(write.nexus)
export(write.tree)
exportClasses(jplace)
exportMethods(drop.tip)
exportMethods(get.treetext)
importClassesFrom(tidytree,treedata)
importFrom(ape,.compressTipLabel)
importFrom(ape,.uncompressTipLabel)
importFrom(ape,Nnode)
importFrom(ape,Ntip)
importFrom(ape,as.AAbin.character)
importFrom(ape,as.DNAbin)
importFrom(ape,as.DNAbin.character)
importFrom(ape,as.phylo)
importFrom(ape,checkLabel)
importFrom(ape,extract.clade)
importFrom(ape,is.rooted)
importFrom(ape,read.FASTA)
importFrom(ape,read.nexus)
importFrom(ape,read.tree)
importFrom(ape,reorder.phylo)
importFrom(ape,root)
importFrom(ape,rtree)
importFrom(ape,trans)
importFrom(ape,which.edge)
importFrom(ape,write.nexus)
importFrom(ape,write.tree)
importFrom(dplyr,filter_)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by_)
importFrom(dplyr,mutate_)
importFrom(dplyr,mutate_if)
importFrom(dplyr,n)
importFrom(dplyr,rename_)
importFrom(dplyr,select_)
importFrom(dplyr,summarize)
importFrom(jsonlite,fromJSON)
importFrom(jsonlite,toJSON)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(methods,"slot<-")
importFrom(methods,.hasSlot)
importFrom(methods,is)
importFrom(methods,missingArg)
importFrom(methods,new)
importFrom(methods,setGeneric)
importFrom(methods,slot)
importFrom(rlang,.data)
importFrom(rlang,enexpr)
importFrom(rlang,quo)
importFrom(rlang,quo_name)
importFrom(tibble,as.tibble)
importFrom(tibble,as_tibble)
importFrom(tibble,data_frame)
importFrom(tidytree,MRCA)
importFrom(tidytree,ancestor)
importFrom(tidytree,as.treedata)
importFrom(tidytree,as_tibble)
importFrom(tidytree,child)
importFrom(tidytree,get.data)
importFrom(tidytree,get.fields)
importFrom(tidytree,get_tree_data)
importFrom(tidytree,groupClade)
importFrom(tidytree,groupOTU)
importFrom(tidytree,offspring)
importFrom(tidytree,parent)
importFrom(tidytree,rootnode)
importFrom(tidytree,sibling)
importFrom(tidytree,treedata)
importFrom(utils,head)
importFrom(utils,tail)
