Package: treeio
Title: Base Classes and Functions for Phylogenetic Tree Input and
        Output
Version: 1.8.2
Authors@R: c(
    person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-6485-8781")),
    person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("ctb", "ths")),
    person("Casey", "Dunn",         email = "casey_dunn@brown.edu",    role = "ctb"),
    person("Bradley", "Jones",      email = "brj1@sfu.ca",             role = "ctb"),
    person("Tyler", "Bradley",      email = "tcb85@drexel.edu",        role = "ctb")
	  )
Description: Base classes and functions for parsing and exporting phylogenetic trees. 'treeio' supports parsing analysis findings from commonly used software packages, allows linking external data to phylogeny and merging tree data obtained from different sources. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file.
Depends: R (>= 3.4.0)
Imports: ape, dplyr, jsonlite, magrittr, methods, rlang, tibble,
        tidytree (>= 0.2.3), utils
Suggests: Biostrings, ggplot2, ggtree, knitr, phangorn, prettydoc,
        testthat, tidyr
VignetteBuilder: knitr
ByteCompile: true
License: Artistic-2.0
Encoding: UTF-8
URL: https://guangchuangyu.github.io/software/treeio
BugReports: https://github.com/GuangchuangYu/treeio/issues
LazyData: true
biocViews: Software, Annotation, Clustering, DataImport,
        DataRepresentation, Alignment, MultipleSequenceAlignment
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/treeio
git_branch: RELEASE_3_9
git_last_commit: 7073240
git_last_commit_date: 2019-08-21
Date/Publication: 2019-08-21
NeedsCompilation: no
Packaged: 2019-08-22 04:12:29 UTC; biocbuild
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>),
  Tommy Tsan-Yuk Lam [ctb, ths],
  Casey Dunn [ctb],
  Bradley Jones [ctb],
  Tyler Bradley [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Built: R 3.6.1; ; 2019-08-22 13:55:26 UTC; windows
