f49bf302c79f0b5551893882be90cfb3 *CITATION
e883606ff51ed2939706c9bb8d36de07 *DESCRIPTION
e9ccf5996d06419cbe0315c58228df46 *INDEX
ab22e253d6bb4c9aca064ca6975de303 *LICENSE
496aa68b4bc34258bf41651803fe9889 *Meta/Rd.rds
614cdeea0e7e1c31448c1ac98a09ef81 *Meta/data.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
f6bbda1a3fb78af9d6b25631e75df0c6 *Meta/hsearch.rds
2d606036a31fa9b1daa30a46d9ccde53 *Meta/links.rds
7196b14e72a19beca345170a7cfce5be *Meta/nsInfo.rds
c541474b3831e108dafa0a7d705b68fe *Meta/package.rds
d68c394a06de6270cc3707106b984250 *Meta/vignette.rds
b1dcea1d92c7ef63212baec4e82b469c *NAMESPACE
b61f18636c059318f9e6cea57004054a *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/transite
1fbadcf3bbb5fc6bda57c91a8ddf0172 *R/transite.rdb
87b4c97f9190099cf7147fe9abce09e4 *R/transite.rdx
ce17f45df4597d70796d9b53e0ae7ad2 *data/ge.rda
856e3d898bd977f7aacbe3dc3de7ab0f *data/kmers.enrichment.rda
7c884a4921235d14642236f55d4d5ff4 *data/motifs.rda
70a6ccc32be167f11f9f460225affa4b *data/toy.motif.matrix.rda
7cb164722ca2f7e950f36d8a2a6938a7 *doc/index.html
857db0fdb25f416d5c5fe60a1bbe6591 *doc/spma.R
c50ba5038aedfc6ae69e4f4e380f9cf9 *doc/spma.Rmd
86a4c8977b22402b5358aa5cd6da571e *doc/spma.html
2f308551e080d48369a2734670d3b5b9 *help/AnIndex
30ef8c23db923dbc4037a06102a8c335 *help/aliases.rds
2ec9aa3daca4565cec3d55a632f28b66 *help/paths.rds
ad0adce33af0580511c0ea3c260b93cd *help/transite.rdb
a771c197f62cb5037193fbec41f11a01 *help/transite.rdx
c22d7cbe940b4720082b10852cd64743 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
446070c41a29c59c9119edcb37b9221c *html/RBPMotif-class.html
8d007bd0be028bc046888114616246bc *html/SpectrumScore-class.html
91585e243b95a736084b550e0803924f *html/calculateKmerEnrichment.html
c8b5096599c450e17df7111fb091922d *html/calculateKmerScores.html
1d153a8472cd28dae5860d18508b58ef *html/calculateLocalConsistency.html
d56a9ebf129630bd9ffdf35cf5ab981d *html/calculateMotifEnrichment.html
277172c585a6f362f85c7a2ed20a2081 *html/calculateTranscriptMC.html
e7a5ced1744eb7469767158fa5c7d980 *html/checkKmers.html
bdf33e5b9a66f2b740adfb519974c830 *html/computeKmerEnrichment.html
57d3a580214e911d1c174422a7d0add5 *html/computeMotifScore.html
6d4ccd381d591e89795ed8092bb304d7 *html/createKmerMotif.html
d5e47e6523d91db76fbc14e486ef6904 *html/createMatrixMotif.html
08db9f5475f66de9306e653cdcf4dc9e *html/drawVolcanoPlot.html
700d6742b66f6cb56ccc23602bad14e3 *html/empiricalEnrichmentMeanCDF.html
3037e076b22f53f40cc2cbc808c74d4d *html/ge.html
018679c51d7bb6af405a221c913434ca *html/generateIUPACByKmers.html
e168a87f27b6cd90d83d24541ab002f3 *html/generateIUPACByMatrix.html
0712ab4c6f92e3cd21faf347d0d91bf2 *html/generateKmers.html
1361284ce5bae57703f59a49aca0d91d *html/generateKmersFromIUPAC.html
5fd39502705f1bbd8c0bf304b9669b10 *html/generatePermutedEnrichments.html
55f874976774e09eb5a36e507218f7b3 *html/geometricMean.html
4e9f13f4b18dbf9b50ec2811ddfac373 *html/getMotifById.html
f7166d57136f5680f6c3b3a5eef98e3d *html/getMotifByRBP.html
6a61e9c6cb00292c588974fa381a5ff0 *html/getMotifs.html
da9eea6871791e6bdbc5f091922b06c7 *html/getPPM.html
db4ad4a83946b49cad89cfb55970cb63 *html/homopolymerCorrection.html
68cdaf894af453fa3f7dacc64735f58d *html/initIUPAClookupTable.html
15c96e051a321490370a37a8b540b0e6 *html/kmers.enrichment.html
66e6e6c01c97b4c695d960318d1ffd7a *html/lookupKmerScores.html
333c194b7f3c4102cb282847833e1b9d *html/motifs.html
96c4390bb12ddcf7a9992fa57ba5c8a5 *html/motifsMetaInfo.html
dbdd1f7394a1ee6d862335e193af0c90 *html/pCombine.html
be3028174989f06fd675fa0ef2d9b210 *html/permTestGeometricMean.html
0f2addd85df8caa1521041f16e3901d2 *html/runKmerSPMA.html
e593ae919db52632120c12f9ff12f853 *html/runKmerTSMA.html
157a51246d336573dab5f85da69e6d09 *html/runMatrixSPMA.html
646a6a31d4b6eafb62f863e09bbe294a *html/runMatrixTSMA.html
9a9d10554e526e7f808e9185677752bc *html/scoreSequences.html
542e59fa3f83fb630d9dd9042d605b99 *html/scoreSpectrum.html
0b43a933f203ae7a1e93e681743a5386 *html/scoreTranscripts.html
f32e9a8f1ae9c769f1ef50c9a7ce734a *html/scoreTranscriptsSingleMotif.html
c617d28350c1b19011779aacf2cd29f5 *html/setMotifs.html
89fd7361a3834ea3a790c2fbde4a4e1f *html/spectrumClassifier.html
de39ccdcb45c5c062530c8e8df26725c *html/subdivideData.html
cf821e15addee5c3c64b4781ee86aab7 *html/toy.motif.matrix.html
8b104385ea32c7351ff3eb5795a7235e *html/transite.html
7c8194811b85eb6e02e54660dcffbb3e *libs/i386/transite.dll
3c527c36bdd7a74c88899f853a27a3ee *libs/x64/transite.dll
