generateIUPACByKmers {transite} | R Documentation

## Generates IUPAC code for a character vector of k-mers

### Description

Generates a compact logo of a motif based on IUPAC codes given by a character vector of k-mers

### Usage

    generateIUPACByKmers(kmers, code = NULL)

### Arguments

`kmers` | character vector of k-mers
`code` | if IUPAC code table has already been initialized by `initIUPAClookupTable`, it can be specified here

### Details

IUPAC RNA nucleotide code:

`A` | Adenine
`C` | Cytosine
`G` | Guanine
`U` | Uracil
`R` | A or G
`Y` | C or U
`S` | G or C
`W` | A or U
`K` | G or U
`M` | A or C
`B` | C or G or U
`D` | A or G or U
`H` | A or C or U
`V` | A or C or G
`N` | any base

### Value

the IUPAC string of the binding site

### References

http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html

### See Also

Other motif functions: `generateIUPACByMatrix`, `generateKmersFromIUPAC`, `getMotifById`, `getMotifByRBP`, `getMotifs`, `getPPM`, `initIUPAClookupTable`, `motifsMetaInfo`, `setMotifs`

### Examples

    generateIUPACByKmers(c("AACCAA", "AACCGG", "CACCGA"))

[Package transite version 1.2.1 Index]