motifs {transite} | R Documentation

## Transite Motif Database

### Description

The Transite motif database contains sequence motifs and associated k-mers of more than 100 different RNA-binding proteins, obtained from publicly available motif databases.

### Usage

    motifs

### Format

A list of lists with the following components:

`id` | motif id
`rbps` | gene symbols of RNA-binding proteins associated with motif
`matrix` | data frame of sequence motif (position weight matrix)
`hexamers` | all motif-associated hexamers
`heptamers` | all motif-associated heptamers
`length` | length of motif in nucleotides
`iupac` | IUPAC string of sequence motif
`type` | type of motif, e.g., RNAcompete
`species` | usually human
`src` | source of motif, e.g., RNA Zoo

### References

http://cisbp-rna.ccbr.utoronto.ca/

http://rbpdb.ccbr.utoronto.ca/

[Package transite version 1.2.1 Index]