kmers.enrichment {transite} | R Documentation

## Example k-mer Enrichment Data

### Description

This data frame with k-mer enrichment data (as produced by `runKmerTSMA`) is used in a code example for k-mer volcano plot function `drawVolcanoPlot`.

### Usage

    kmers.enrichment

### Format

A data frame with the following columns:

`kmer` | contains all hexamers (AAAAAA to UUUUUU)
`foreground.count` | absolute k-mer frequency in foreground set
`background.count` | absolute k-mer frequency in background set
`enrichment` | enrichment of k-mer in foreground relative to background
`p.value` | associated p-value of enrichment
`adj.p.value` | multiple testing corrected p-value

[Package transite version 1.2.1 Index]