Package: topconfects
Title: Top Confident Effect Sizes
Version: 1.0.0
Authors@R: person("Paul", "Harrison", email = "paul.harrison@monash.edu", role = c("aut", "cre"), comment=c(ORCID="0000-0002-3980-268X"))
Description: Find the largest confident effect sizes from a large collection, while maintaining False Discovery Rate and False Coverage-statement Rate control. The main application is differential gene expression analysis, providing genes ranked in order of confident log2 fold change.
Depends: R (>= 3.6.0)
Imports: methods, utils, stats, assertthat, ggplot2
Suggests: limma, edgeR, DESeq2, NBPSeq, dplyr, testthat, knitr,
        rmarkdown, reshape2, tidyr, readr, org.At.tair.db,
        AnnotationDbi
License: LGPL-2.1 | file LICENSE
URL: https://github.com/pfh/topconfects
Encoding: UTF-8
RoxygenNote: 6.1.1
VignetteBuilder: knitr
BugReports: https://github.com/pfh/topconfects/issues
biocViews: GeneExpression, DifferentialExpression, Transcriptomics,
        RNASeq, mRNAMicroarray, Regression, MultipleComparison
git_url: https://git.bioconductor.org/packages/topconfects
git_branch: RELEASE_3_9
git_last_commit: e0a49c1
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
NeedsCompilation: no
Packaged: 2019-05-03 05:39:13 UTC; biocbuild
Author: Paul Harrison [aut, cre] (<https://orcid.org/0000-0002-3980-268X>)
Maintainer: Paul Harrison <paul.harrison@monash.edu>
Built: R 3.6.0; ; 2019-05-03 14:34:40 UTC; windows
