| systemPipeR::systemPipeChIPseq | ChIP-Seq Workflow Template | HTML | source | R code | |
| systemPipeR::systemPipeR | systemPipeR: NGS workflow and report generation environment | HTML | source | R code | |
| systemPipeR::systemPipeRIBOseq | RIBO-Seq Workflow Template | HTML | source | R code | |
| systemPipeR::systemPipeRNAseq | RNA-Seq Workflow Template | HTML | source | R code | |
| systemPipeR::systemPipeVARseq | VAR-Seq Workflow Template | HTML | source | R code |