# Generated by roxygen2: do not edit by hand

export(checkPairedEnd)
export(filterDNA)
export(getWinFromBamFile)
export(intersectWithFeature)
export(plotHist)
export(plotWin)
import(S4Vectors)
import(TxDb.Hsapiens.UCSC.hg38.knownGene)
import(magrittr)
importFrom(BiocGenerics,strand)
importFrom(GenomeInfoDb,seqinfo)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomicAlignments,extractAlignmentRangesOnReference)
importFrom(GenomicRanges,"end<-")
importFrom(GenomicRanges,"ranges<-")
importFrom(GenomicRanges,"start<-")
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,ranges)
importFrom(IRanges,IRanges)
importFrom(IRanges,Views)
importFrom(IRanges,coverage)
importFrom(IRanges,end)
importFrom(Rsamtools,"bamMapqFilter<-")
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,BamFileList)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,bamMapqFilter)
importFrom(Rsamtools,filterBam)
importFrom(Rsamtools,scanBam)
importFrom(S4Vectors,Rle)
importFrom(S4Vectors,mcols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(dplyr,one_of)
importFrom(dplyr,select)
importFrom(dplyr,starts_with)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(grid,unit)
importFrom(gridExtra,grid.arrange)
importFrom(magrittr,set_colnames)
importFrom(methods,is)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(stats,pnorm)
importFrom(stats,rbinom)
importFrom(stringr,str_extract)
