25020ed2a3865e84b696f38dfb326c16 *DESCRIPTION
2b8f51f918be6b2bc3dcda03e5e9b1b7 *INDEX
c5da47efc358a5dcf57f1555c84fb571 *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
9d9f4d5d340aa2f97a443b29b354a643 *Meta/hsearch.rds
43470f1545769bc5417519ed76d64ec8 *Meta/links.rds
e8d9e7d6a96589ce87822f655a32b6b4 *Meta/nsInfo.rds
f9340f73d097f31c6f6b4f321bb1e8fd *Meta/package.rds
575c43559bdd07389dd0626e3c21c864 *Meta/vignette.rds
cf53147f849271c168b3d415181d4568 *NAMESPACE
a6ab71a76ed6f92413a8ce17c7527724 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/spliceSites
b675fe5a390c348684203c9c652cb11e *R/spliceSites.rdb
5aed53b8f7108e4a52e6cc4946d5b053 *R/spliceSites.rdx
a224c81d22888f425bccae0d1088bdee *doc/index.html
cedc8ef9677534b0f46113901cde5ed3 *doc/spliceSites.R
9ca9706612d14c8cf740e0afed378d21 *doc/spliceSites.Rnw
aad9202354460224dedbfa72976491d4 *doc/spliceSites.pdf
b11bedd84152021b985ce2e7d6b57115 *extdata/cuff_files/1.genes.fpkm_tracking
7c544de0fe9d286aa2339691ce232cde *extdata/cuff_files/10.genes.fpkm_tracking
5cc043050c31f4c0dc9fe5b9582e1306 *extdata/cuff_files/2.genes.fpkm_tracking
f2c2a4e0b765dff2f4df9afe657e88f2 *extdata/cuff_files/3.genes.fpkm_tracking
c8e86d832c542d2e5d682628eb432522 *extdata/cuff_files/4.genes.fpkm_tracking
3f0231707ad344430667d6f34c250f74 *extdata/cuff_files/5.genes.fpkm_tracking
3673863cb73867c1d26254c277229ea2 *extdata/cuff_files/6.genes.fpkm_tracking
49b26fd74e42dbbe7ebc6b4b05539e60 *extdata/cuff_files/7.genes.fpkm_tracking
1e7da66d13ef59faa823efd6d6f354b2 *extdata/cuff_files/8.genes.fpkm_tracking
b4d2f0be637faa1bdc7be34669d1a9be *extdata/cuff_files/9.genes.fpkm_tracking
b9cd4a6c5395a5f4be3ba29889ac34e8 *extdata/cuff_files/groups.csv
505e2b84cafda98198946350c4e24fcd *extdata/dna_small.RData
6b7690e372d06a994fd3239f5b70c416 *extdata/ens_small.RData
e18ad26d43bb1c59584b7ae65cd9aeb0 *extdata/hbs.RData
ac50716bc5d5c839cceb266b9fb377af *extdata/key.RData
ae5a622e24d5340dedd1f0d5f278ba4b *extdata/maxent.RData
8dc99063670b8b9a41b67dc5157188f8 *extdata/rna_fem.bam
bc28c6b865ff133b53e366d6fd59d3ab *extdata/rna_fem.bam.bai
81beabca15167ec14f6a3f60319ae37b *extdata/rna_mal.bam
0f6805d235d28c2d6b794b830858ef55 *extdata/rna_mal.bam.bai
e46118bf30b15dc1184fa2021bce00d9 *extdata/uc_small.RData
2121d22278868cf47a10e42f9a118161 *extdata/uc_small_junc.RData
9af0844fc5a636f521d4a4fb650d4c6f *help/AnIndex
761970626a92728b76b9378667a0cbd5 *help/aliases.rds
2945705a459d62eafb88a41d0f0ac0fc *help/paths.rds
fcf22b34d69466784790d58913359af6 *help/spliceSites.rdb
4beab55dd003e78eb911a26663ca36ed *help/spliceSites.rdx
d1fe0608e97aadd4dd7beacb88492806 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
202cc57f29afbae853db2caf6971ed65 *html/SpliceCountSet-class.html
b8c0ddbd5c03fb09fbe1201113369e58 *html/aaGapSites-class.html
05ecec70e0a61948d09b09befbb420ac *html/addGeneAligns.html
103ed61ce39fd36bdd9093b96b0b3f16 *html/addGenomeData-ExpressionSet.html
10a7acb867204e452bd5cc31d9ffb38b *html/addGenomeData-gapSites.html
5b0b30bcc7c728e063f6092aa6df084d *html/addHbond.html
6ee644b0cf74ea01413a0271f6e21d68 *html/addMaxEnt.html
047fccab7735ecb9bcf289e4da239922 *html/alt_X_ranks.html
3fe46d9774f01c39aef217140a4152fa *html/annGapSites-class.html
fae7d7af89eb1797b23a4b61364356ea *html/annotate-ExpressionSet.html
094b84bd9754f09331dad30ef30e1c2e *html/annotation.html
b8697434465c67e05cad0adcce474fa5 *html/as.data.frame-methods.html
2b89037d66fbef831a1e8784e32d17e9 *html/c-methods.html
04954c347d590ca3b7509c972e2ce648 *html/cRanges-class.html
2850d28a2c32f9f03cfe2d2b6958ea4a *html/caRanges-class.html
edfdb920d3ad6d95576fb66c9d1d32ca *html/cdRanges-class.html
dce1b3689b0c331709df9f6eca8e3046 *html/countByGeneName.html
aeeaa3ee5c861f7693599061e5068962 *html/dim-methods.html
279f2d24a9219884d71a6bc24c6f63e8 *html/dnaGapSites-class.html
a60ffd67f079bea9abaa51d2c363fa5e *html/dnaRanges.html
7f878e63c4ac5393878f5b19ab5eb6e5 *html/extractByGeneName.html
44be624611aa5e97343e3ac86ec0b7e0 *html/extractRange.html
bbe2b875084c4a860013d1267ca5de7a *html/gapSites-class.html
d28d7957e740836a1439a0ecb3d8db1d *html/gapSites.html
11cf86e76dc6b9bdebcf2695969951ff *html/getGapSites.html
9012299ed413a25fce400db7b20ad210 *html/hbond-class.html
91005d347fe2b269aba7cbb3bb3e1a13 *html/head-methods.html
8f6ef44a21e850cb2e525c9d41b6c23b *html/initialize-methods.html
44aadc3e571987a7e5bd8d33899aef8b *html/keyProfiler-class.html
9f10edbd3a59f3fe8fcff6f107e73f5f *html/lrCodons.html
127f8c37c7f4c8eba5a8e87621234b85 *html/maxEnt-class.html
96b2c276df06c8e1dd460d65fc27bbc6 *html/merge-methods.html
d409d6e92f0037ad20f1fccacc1f64eb *html/plotGeneAlignDepth.html
48ff7f911df453a073062677115744c5 *html/rangeByGeneName.html
c62da5711377af4b113c55158d9d4017 *html/readCuffGeneFpkm.html
268c80c92db93ab4ca16bb5ccb58eaee *html/readExpSet.html
08b541641f67e37be465f4c186c00eb4 *html/readMergedBamGaps.html
d12cc54c51b0508e7413196182719102 *html/readTabledBamGaps.html
45d01403cac85500056a0b887d44c07c *html/seqlogo.html
29cadd8dc9c79f575ab35447d55417d9 *html/silic_tryp.html
8ff4e2989a42dba1fc291e2baeaca0ae *html/sortTable-methods.html
0a79991bc2b31d0e36afd9aa8bba26f4 *html/spliceSites-package.html
fd1554545339fc9ff87390b80f6c46e5 *html/trim.html
bea18664d07feed0e267caf14d2de0de *html/truncateSeq.html
2ba40efdf38f02997a758b80946d61e8 *html/truncate_seq.html
ce5b1913a4a4325c730d3252f8dc5efb *html/trypsinCleave.html
41634b2ef22a9c72dad7c7f114d74593 *html/uniqueJuncAnn.html
6b587132d064d02f584916f132025a1b *html/write.files.html
77a99ddeccdece24a2fcebed8cf627ff *html/xCodons.html
e514284d01ae12433f7a465e199ad435 *html/xJunc.html
0805e6311c790f056e18c93ca194460a *html/xJuncStrand.html
7428fdd0cdd427f073a3ab4d8bf2fc3a *html/z[-methods.html
fba65241b85bad3072ab615e06834c63 *libs/i386/spliceSites.dll
7f236f26bf18eb4d25d4b66f7a423478 *libs/x64/spliceSites.dll
