Package: specL
Type: Package
Title: specL - Prepare Peptide Spectrum Matches for Use in Targeted
        Proteomics
Version: 1.18.1
Authors@R: c(person("Christian", "Panse", 
        email = "cp@fgcz.ethz.ch",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0003-1975-3064")),
    person("Jonas", "Grossmann",
        email = "jg@fgcz.ethz.ch",
	role = "aut",
	comment = c(ORCID = "0000-0002-6899-9020")),
    person("Christian", "Trachsel",
	role = "aut"),
    person("Witold E.", "Wolski",
	email = "wewolski@gmail.com",
	role = "ctb"))
Depends: R (>= 3.6), DBI (>= 0.5), methods (>= 3.3), protViz (>= 0.4),
        RSQLite (>= 1.1), seqinr (>= 3.3)
Suggests: BiocGenerics, BiocStyle (>= 2.2), knitr (>= 1.15), rmarkdown,
        RUnit (>= 0.4)
Description: provides a function for generating spectra libraries
    which can be used for MRM SRM MS workflows in proteomics. The
    package provides a BiblioSpec reader, a function which can add
    the protein information using a FASTA formatted amino acid
    file, and an export method for using the created library in the
    Spectronaut software.
License: GPL-3
URL: http://bioconductor.org/packages/specL/
Collate: read.bibliospec.R genSwathIonLib.R annotate.protein_id.R
        AllGenerics.R specL.R specLSet.R cdsw.R zzz.R
biocViews: MassSpectrometry, Proteomics
LazyData: true
BugReports: https://github.com/fgcz/specL/issues
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/specL
git_branch: RELEASE_3_9
git_last_commit: ba55573
git_last_commit_date: 2019-09-16
Date/Publication: 2019-09-16
NeedsCompilation: no
Packaged: 2019-09-17 03:09:12 UTC; biocbuild
Author: Christian Panse [aut, cre] (<https://orcid.org/0000-0003-1975-3064>),
  Jonas Grossmann [aut] (<https://orcid.org/0000-0002-6899-9020>),
  Christian Trachsel [aut],
  Witold E. Wolski [ctb]
Maintainer: Christian Panse <cp@fgcz.ethz.ch>
Built: R 3.6.1; ; 2019-09-17 14:04:40 UTC; windows
