clueVehicle {slinky} | R Documentation

## clueVehicle

### Description

Fetch the vehicle control applicable to given ids (distil_id). Expects that perturbagen is of type trt_cp.

### Usage

    clueVehicle(x, ids, verbose = FALSE)

    ## S4 method for signature 'Slinky'
    clueVehicle(x, ids, verbose = FALSE)

### Arguments

`x` | a Slinky Object
`ids` | The distil_id(s) to lookup.
`verbose` | Do you want to know how things are going? Default is FALSE.

### Value

The name of the vehicle control for the queried perturbagen(s). This is a convenience wrapper to the profiles API which queries clue.io and unwraps response.

### Examples

    # for build/demo only.  You MUST use your own key when using the slinky
    # package.
    user_key <- httr::content(httr::GET('https://api.clue.io/temp_api_key'),
                              as='parsed')$user_key
    sl <- Slinky(user_key,
                     system.file('extdata', 'demo.gctx',
                          package='slinky'),
                     system.file('extdata', 'demo_inst_info.txt',
                         package = 'slinky'))
    amox <- clue(sl, where_clause = list("pert_iname" = "amoxicillin",
                                        "cell_id" = "MCF7",
                                        "is_gold" = TRUE))
    amox.ctrl <- clueVehicle(sl, amox$distil_id)

[Package slinky version 1.2.2 Index]