summarizeTable {singleCellTK} | R Documentation

## Summarize SCtkExperiment

### Description

Creates a table of summary metrics from an input SCtkExperiment.

### Usage

    summarizeTable(inSCE, useAssay = "counts", expressionCutoff = 1700)

### Arguments

`inSCE` | Input SCtkExperiment object. Required
`useAssay` | Indicate which assay to summarize. Default is "counts"
`expressionCutoff` | Count number of samples with fewer than expressionCutoff genes. The default is 1700.

### Value

A data.frame object of summary metrics.

### Examples

    data("mouseBrainSubsetSCE")
    summarizeTable(mouseBrainSubsetSCE)

[Package singleCellTK version 1.4.2 Index]