getBiomarker {singleCellTK} | R Documentation

## Given a list of genes and a SCtkExperiment object, return the binary or continuous expression of the genes.

### Description

Given a list of genes and a SCtkExperiment object, return the binary or continuous expression of the genes.

### Usage

    getBiomarker(inSCE, gene, binary = "Binary", useAssay = "counts")

### Arguments

`inSCE` | Input SCtkExperiment object. Required
`gene` | gene list
`binary` | "Binary" for binary expression or "Continuous" for a gradient. Default: "Binary"
`useAssay` | Indicate which assay to use. The default is "counts".

### Value

getBiomarker(): A data.frame of expression values

### Examples

    getBiomarker(mouseBrainSubsetSCE, gene="C1qa")

[Package singleCellTK version 1.4.2 Index]