Package: sesame
Type: Package
Title: Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Description: Tools For analyzing Illumina Infinium DNA methylation arrays.
Version: 1.2.0
Authors@R: c(person("Wanding", "Zhou", role = c("aut","cre"),
             email = "zhouwanding@gmail.com"),
             person("Hui", "Shen", role = c("aut"),
             email = "Hui.Shen@vai.org"),
             person("Timothy", "Triche", role = "ctb"),
             person("Bret", "Barnes", role = "ctb"))
Depends: R (>= 3.5), sesameData, methods
License: Artistic-2.0
RoxygenNote: 6.1.1
Imports: BiocParallel, R6, grDevices, utils, illuminaio, MASS,
        GenomicRanges, IRanges, grid, preprocessCore, stats, S4Vectors,
        randomForest, wheatmap, ggplot2, parallel, matrixStats, DNAcopy
Suggests: scales, knitr, rmarkdown, testthat, minfi,
        SummarizedExperiment, FlowSorted.CordBloodNorway.450k,
        FlowSorted.Blood.450k, dplyr, tidyr, BiocStyle
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://github.com/zwdzwd/sesame
BugReports: https://github.com/zwdzwd/sesame/issues
biocViews: DNAMethylation, MethylationArray, Preprocessing,
        QualityControl
Collate: 'GEO.R' 'QC.R' 'SigSetList.R' 'sesame.R' 'SigSetMethods.R'
        'age.R' 'background_correction.R' 'cell_composition.R' 'cnv.R'
        'controls.R' 'detection.R' 'dye_bias.R' 'fileSet.R' 'open.R'
        'sesamize.R' 'simulate_data.R' 'snp.R' 'utils.R' 'visualize.R'
git_url: https://git.bioconductor.org/packages/sesame
git_branch: RELEASE_3_9
git_last_commit: 1b9bddf
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
NeedsCompilation: no
Packaged: 2019-05-03 05:27:35 UTC; biocbuild
Author: Wanding Zhou [aut, cre],
  Hui Shen [aut],
  Timothy Triche [ctb],
  Bret Barnes [ctb]
Maintainer: Wanding Zhou <zhouwanding@gmail.com>
Built: R 3.6.0; ; 2019-05-03 14:25:23 UTC; windows
