sesamize {sesame} | R Documentation

## "fix" an RGChannelSet (for which IDATs may be unavailable) with Sesame The input is an RGSet and the output is a sesamized minfi::GenomicRatioSet

### Description

"fix" an RGChannelSet (for which IDATs may be unavailable) with Sesame The input is an RGSet and the output is a sesamized minfi::GenomicRatioSet

### Usage

    sesamize(rgSet, naFrac = 1, BPPARAM = SerialParam())

### Arguments

`rgSet` | an RGChannelSet, perhaps with colData of various flavors
`naFrac` | maximum NA fraction for a probe before it gets dropped (1)
`BPPARAM` | get parallel with MulticoreParam(n)

### Value

a sesamized GenomicRatioSet

### Examples

    # Takes about two minutes to process 48 samples on my 48-core desktop

    ## Not run:
        if (require(FlowSorted.CordBloodNorway.450k)) {
            sesamize(
                FlowSorted.CordBloodNorway.450k[,1:2], BPPARAM=MulticoreParam(2))
        }

    ## End(Not run)

[Package sesame version 1.2.0 Index]