# SeSAMe-Minfi interaction

SeSAMe can be converted back and forth from Minfi RGChannelSet in multiple ways. One can sesamize a minfi `RGChannelSet` which returns a `GenomicRatioSet`. Here we are illustrating using the `FlowSorted.Blood.450k` object, which is distributed in the `minfi::RGChannelSet`.

    library(sesame)
    library(FlowSorted.Blood.450k)

    grSet <- sesamize(FlowSorted.Blood.450k[,1:4])

    ## Sesamizing WB_105...

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Sesamizing WB_218...

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Sesamizing WB_261...

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Sesamizing PBMC_105...

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Warning in regularize.values(x, y, ties, missing(ties)): collapsing to
    ## unique 'x' values

    ## Loading required package: IlluminaHumanMethylation450kanno.ilmn12.hg19

    ## Loading required package: IlluminaHumanMethylation450kmanifest

    grSet

    ## class: GenomicRatioSet
    ## dim: 485512 4
    ## metadata(1): SNPs
    ## assays(2): Beta CN
    ## rownames(485512): cg13869341 cg14008030 ... cg08265308 cg14273923
    ## rowData names(0):
    ## colnames(4): WB_105 WB_218 WB_261 PBMC_105
    ## colData names(8): Sample_Name Slide ... CellType Sex
    ## Annotation
    ##   array: IlluminaHumanMethylation450k
    ##   annotation: ilmn12.hg19
    ## Preprocessing
    ##   Method: SeSAMe (type I)
    ##   minfi version: 1.30.0
    ##   Manifest version: 0.6.0