readIDATpair {sesame} | R Documentation

## Import a pair of IDATs from one sample

### Description

The function takes a prefix string that are shared with _Grn.idat and _Red.idat. The function returns a `SigSet`.

### Usage

    readIDATpair(prefix.path, platform = "", manifest = NULL,
      controls = NULL, readNBeads = FALSE, verbose = FALSE)

### Arguments

`prefix.path` | sample prefix without _Grn.idat and _Red.idat
`platform` | EPIC, HM450 and HM27 etc.
`manifest` | optional design manifest file
`controls` | optional control probe manifest file
`readNBeads` | whether to read number of beads
`verbose` | be verbose? (FALSE)

### Value

a `SigSet`

### Examples

    sset <- readIDATpair(sub('_Grn.idat','',system.file(
        "extdata", "4207113116_A_Grn.idat", package = "sesameData")))

[Package sesame version 1.2.0 Index]