.expand_cigar_dt {seqsetvis} | R Documentation

## Expand intermediate bam fetch by cigar codes

### Description

see sam specs for cigar details

### Usage

    .expand_cigar_dt(cigar_dt, op_2count = c("M", "D", "=", "X"))

### Arguments

`cigar_dt` | data.table with 5 required named columns in any order. c("which_label", "seqnames", "strand", "start", "cigar")
`op_2count` | Cigar codes to count. Default is alignment (M), deletion (D), match (=), and mismatch (X). Other useful codes may be skipped regions for RNA splicing (N). The locations of any insterions (I) or clipping/padding (S, H, or P) will be a single bp immediately before the interval.

### Value

data.table with cigar entries expanded

[Package seqsetvis version 1.4.1 Index]