chromHMM_demo_data {seqsetvis} | R Documentation

## chromHMM state segmentation in the MCF7 cell line

### Description

Vignette data for seqsetvis was downloaded directly from GEO series GSE57498. This data is the state segmentation by chromHMM in the MCF7 cell line. chromHMM creates a hidden markov model by integrating several ChIP-seq samples, in this case:

- MCF7_H3K27ac_ChIP-Seq

- MCF7_H3K27me3_ChIP-Seq

- MCF7_H3K4me1_ChIP-Seq

- MCF7_H3K4me3_ChIP-Seq

- MCF7_RNApolIIp_ChIP-Seq

Data from GEO series GSE57498 is from the publication Taberlay PC et al. 2014

### Details

Contains:

- `chromHMM_demo_overlaps_gr`

- `chromHMM_demo_bw_states_gr`

- `chromHMM_demo_state_total_widths`

- `chromHMM_demo_state_colors`

- `chromHMM_demo_segmentation_url`

- `chromHMM_demo_chain_url`

[Package seqsetvis version 1.4.1 Index]