CTCF_in_10a_profiles_dt {seqsetvis} | R Documentation

## Profiles for 100 randomly selected regions from overlapping CTCF peaks in 10a cell ChIP-seq Results from fetching bigwigs with CTCF_in_10a_overlaps_gr.

### Description

A tidy data.table at window size 50 bp within 350 bp of peak center The variables are as follows:

### Format

A tidy data.table of 2100 rows and 9 columns

### Details

part of `CTCF_in_10a_data`

1. seqnames. chromosome for GRanges compatibility

2. start. start of interval

3. end. end of interval

4. width. width of interval

5. strand. leftover from GRanges.

6. id. unique identifier

7. y. fold-enrichment over input.

8. x. bp relative to center

9. sample. name of originating sample

[Package seqsetvis version 1.4.1 Index]