writeCNProfile {seqCNA} | R Documentation

## Outputs the processed profile of a `SeqCNAInfo-class` object to the specified folder.

### Description

The output columns depend on the processing applied on the `SeqCNAInfo-class` object.

### Usage

    writeCNProfile(rco, folder)

### Arguments

`rco` | A `SeqCNAInfo-class` object.
`folder` | Path to the folder where the table with the output from the `SeqCNAInfo-class` object is to be generated.

### Value

Nothing is returned from this function. Check the `folder` folder for a text file called `seqCNA_out.txt`.

### Author(s)

David Mosen-Ansorena

### Examples

    data(seqsumm_HCC1143)
    rco = readSeqsumm(tumour.data=seqsumm_HCC1143)
    rco = applyFilters(rco, 0, 1, 0, 2, FALSE, plots=FALSE)
    rco = runSeqnorm(rco, plots=FALSE)
    rco = runGLAD(rco)
    rco = applyThresholds(rco, seq(-0.9,4,by=0.9), 1)

    writeCNProfile(rco, tempdir())

[Package seqCNA version 1.30.0 Index]