test_similarities {seqCAT} | R Documentation

## Collated similarities object

### Description

Collated similarities of multiple sample comparisons from "sample1" and "sample" from the example.vcf file, for use in unit tests.

### Usage

    data(test_similarities)

### Format

A dataframe with 3 rows and 6 columns:

sample_1

  name of sample 1

sample_2

  name of sample 2

overlaps

  the number of overlaps for the comparison

matches

  the number of matches for the comparison

concordance

  the concordance of the profiles

similarity_score

  the similarity score of the profiles

[Package seqCAT version 1.6.3 Index]