b992bc879d45e674775bf74fc6ff138c *DESCRIPTION
900680b0d4cbc3e877c83f0c40825892 *INDEX
1d93b18cf4ef289ba6e334a0f660fa1d *Meta/Rd.rds
4d093a30b86a2df1506744d2ee4f9b0c *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
8f8abfb7de8a4c6811d9eed470c06179 *Meta/hsearch.rds
da8c0bb1676e8013ce9b2453f317bfda *Meta/links.rds
da30c51afa8b75dc8d705bf1b254a10f *Meta/nsInfo.rds
4cc59de0eb525611dfa224f18654b6e4 *Meta/package.rds
c8278efa6bf2b09c2c9278dc909de9a3 *Meta/vignette.rds
745a248d66abbd2455d3fbd851723b27 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/segmentSeq
5eb84605d74f72956d0412a0841c6d93 *R/segmentSeq.rdb
03a98704e81fa5bdd4ebf30ed76a4281 *R/segmentSeq.rdx
e0fdeb3e6f073566bf1115a64d7ebeda *data/hSL.RData
aa64b9983d25a48733870ed50d1b6b77 *doc/index.html
15f4c7df8fd84000cb3a9bf405b4e688 *doc/methylationAnalysis.R
5f7a9bccf604aff19003d3e514230544 *doc/methylationAnalysis.Rnw
9c115adbd867197053ac2908e71ce958 *doc/methylationAnalysis.pdf
2177f37f8db17c1eaa5773248b58431d *doc/segmentSeq.R
dc3e5ea6060691ece51c17a273a3b0b5 *doc/segmentSeq.Rnw
37a7e336919e0f06938ecac3822b58f9 *doc/segmentSeq.pdf
3e06d773f7fc796b9f8abfbd87859c91 *extdata/SL10.txt
d4614b7e3a4b1d43982ddfb5756b3c55 *extdata/SL26.txt
b743c46dcbdbebc79f25c8402c664099 *extdata/SL32.txt
557c9c052a14cbeb5794a5d40520ee98 *extdata/SL9.txt
f9e97daa13b3f4e7b2554cfc838e20b6 *extdata/short_13_C24_col_trim.fastq_CG_methCalls.gz
6202ab9dfdfca80c02a65f4e6bb528fa *extdata/short_18B_C24_C24_trim.fastq_CG_methCalls.gz
67b74bf8edfa841d34a31dfd467c8c3f *extdata/short_Sample_17A_trimmed.fastq_CG_methCalls.gz
87ff08b3a90565b2d8b826373e30dc0e *extdata/short_Sample_28_trimmed.fastq_CG_methCalls.gz
980b344cf620586acacd236f46a7a13c *help/AnIndex
bc8b862cad35d343e9d4c878a974b293 *help/aliases.rds
125f9b34900941ea16b93622c99cbc11 *help/paths.rds
49e37d5961eb438ecd3173518968245f *help/segmentSeq.rdb
9b82cacda76a663743f3f06064eaeced *help/segmentSeq.rdx
f8da14e407c8d49bef2d3ad4173c8bbd *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
5a199849b522c05b3e736a25d421d1d0 *html/SL.html
2636d68b534902032b3c1a1046bd2bc9 *html/alignmentClass-class.html
512b230a64367b23094283eb5af471d1 *html/alignmentData-class.html
1c5936f93c1e20ae7fcb87bb082d13c7 *html/alignmentMeth-class.html
93de9bde345740a6dd1926654cf956e9 *html/averageMethylationRegions.html
786bce8848b181e4d8510e0fb8a7be29 *html/classifySeg.html
826c6b23c3d52128a5fd2b9f644e4514 *html/findChunks.html
2a14323d2846497c140af0a0f051e453 *html/getCounts.html
35f7ecb5cb4c3d4f486bc08456849745 *html/getOverlaps.html
7f384e30e9f834eb1903b62ca11d938f *html/givenExpression.html
51533da71c3259fc45e0fb506ddae07f *html/hSL.html
bdc3a29067dce6c52876eef14dfe9105 *html/heuristicSeg.html
82392f622d8cf97f62e04bc832662bcf *html/lociData-class.html
203ac81340901f8add801fdc4caa7d31 *html/lociLikelihoods.html
0888b93c17018f4d97d4c5062abbf70c *html/mergeMethSegs.html
810bf2458b23eeae1fee5db1f13ddbcc *html/methData-class.html
7666b1183e334ec86efd17a1ceef7941 *html/normaliseNC.html
212f9bbfeba0ef6e2df5f7999985d7b1 *html/plotGenome.html
2a848732f149c6526d910a554a7b7899 *html/plotMeth.html
885ae7ba5314646ad6256bc249ba01bd *html/plotMethDistribution.html
55b9666d180cfdc5bb350a36a8c98f35 *html/processAD.html
409e5833bc5e855a12e56110dfe57bae *html/readMethods.html
b9b0c2ddbf77230a62c8ce79718f5896 *html/readMeths.html
6ebbe715523bea12663a14bef56dd5c7 *html/segClass-class.html
41bd357151426d92fbc352299e389c3a *html/segData-class.html
d0955857178dec0c85dd455906364e9b *html/segMeth-class.html
ef6ae0c00f422e8b532dbf96efa20888 *html/segmentSeq-package.html
170854174c66e2f92979dc9183c6b960 *html/selectLoci.html
91fd974633e2972af88823e5985090e2 *html/summariseLoci.html
b65c8d318cf683d710376faf9e9120e2 *html/thresholdFinder.html
