cxds_bcds_hybrid {scds} | R Documentation

## Find doublets/multiples in UMI scRNA-seq data;

### Description

Annotates doublets/multiplets using the hybrid approach

### Usage

    cxds_bcds_hybrid(sce, cxds_args = NULL, bcds_args = NULL)

### Arguments

`sce` | single cell experiment (`SingleCellExperiment`) object to analyze; needs `counts` in assays slot.
`cxds_args` | list, arguments for cxds function in list form. Default: NULL
`bcds_args` | list, arguments for bcds function in list form. Default: NULL

### Value

sce input sce object `SingleCellExperiment` with doublet scores added to colData as "hybrid_score" column.

### Examples

    data("sce_chcl")
    ## create small data set using only 100 cells
    sce_chcl_small = sce_chcl[, 1:100]
    sce_chcl_small = cxds_bcds_hybrid(sce_chcl_small)

[Package scds version 1.0.0 Index]