BQ3_Array               create BQ3_Array instance given url (filepath)
                        and entity (host) name
BQ3_Array-class         extension of DelayedArray for BigQuery content
BQ3_ArraySeed-class     BQ3_Array for BigQuery matrix content
BQ3_Matrix-class        extension of DelayedMatrix for HDF Server
                        content
BQ3_Source              construct a BigQuery resource interface
BQ3_Source-class        Represent information about a BigQuery resource
                        with a 'triple' database schema. This is
                        targeting the isb-cgc TCGA layout. BigQuery
                        Records are regarded as triples, within major
                        groups defined by filtervbl. Triples have
                        content subject - gene - value, to be pivoted
                        to genes(rows) x subjects(columns) with values
                        as entries.
BQM_Array               create BQM_Array instance given url (filepath)
                        and entity (host) name
BQM_Array-class         extension of DelayedArray for BigQuery content
BQM_ArraySeed-class     BQM_Array for BigQuery matrix content
BQM_Matrix-class        extension of DelayedMatrix for HDF Server
                        content
BQM_Source              construct a BigQuery resource interface, for a
                        matrix-like table with one column devoted to
                        row identification (rowkeyfield) and all other
                        columns assumed numeric
BQM_Source-class        Represent information about a BigQuery resource
                        with a 'triple' database schema. This is
                        targeting the isb-cgc TCGA layout. BigQuery
                        Records are regarded as triples, within major
                        groups defined by filtervbl. Triples have
                        content subject - gene - value, to be pivoted
                        to genes(rows) x subjects(columns) with values
                        as entries.
BQSummarizedExperiment-class
                        Define a class to use BigQuery data through
                        SummarizedExperiment interface
RESTfulSummarizedExperiment
                        Construct RESTfulSummarizedExperiment
RESTfulSummarizedExperiment-class
                        HDF5Server-based assay for SummarizedExperiment
assay,BQSummarizedExperiment,missing-method
                        extract assay data
assayNames,BQSummarizedExperiment-method
                        Placeholder for assay name extractor for a
                        BQSummarizedExperiment instance.
assays,RESTfulSummarizedExperiment-method
                        Assays access for RESTfulSummarizedExperiment
basic_clinvars          provide a collection of basic clinical
                        variables to limit size of clinical data return
bqConn                  generate a connection to BigQuery for specific
                        dataset
cgcConn                 Simplify connection to a BigQuery dataset for
                        the project "isb-cgc"
dim,BQ3_ArraySeed-method
                        dim derived from saved dimnames
dim,BQM_ArraySeed-method
                        dim derived from saved dimnames
dim,RESTfulSummarizedExperiment-method
                        Dimension access for
                        RESTfulSummarizedExperiment
dimnames,BQ3_ArraySeed-method
                        dimnames are saved in the BQ3_ArraySeed
dimnames,BQM_ArraySeed-method
                        dimnames are saved in the BQM_ArraySeed
goPatt                  Create a data.frame with ENSEMBL and SYMBOL
                        identifiers associated with a GO TERM specified
                        by a regular expression in 'termPattern'
gtexTiss                Convenience function for access to gene-level
                        GTEx tissues, as quantified in recount
isbCgcDatasets          Access the dataset names in the "isb-cgc"
                        project
isbCgcTables            List the tables in a selected dataset
pancan_SE               illustrate DelayedArray assay from BigQuery
                        backend in SummarizedExperiment
se100k                  Convenience functions using HSDS server to
                        extract tenx neurons full or subset data
seByTumor               Given a BigQueryConnection to the 2017
                        GDC-oriented ISB TCGA bigtables, obtain a
                        SummarizedExperiment 'shell' rowData and
                        colData
seByTumor_2016          Given a BigQueryConnection to the 2016 ISB TCGA
                        bigtables, obtain a SummarizedExperiment
                        'shell' rowData and colData
tasicCortex             A set of mouse cortex marker genes.
