plot.localZScoreResultsList {regioneR} | R Documentation

## Plot a list of localZscore results

### Description

Function for plotting the a `localZScoreResultsList` object.

### Usage

    ## S3 method for class 'localZScoreResultsList'
    plot(x, ncol = NA, main = "",
      num.x.labels = 5, ...)

### Arguments

`x` | an object of class `localZScoreResultsList`.
`main` | a character specifying the main title of the plot. Defaults to no title.
`num.x.labels` | a numeric specifying the number of ticks to label the x axis. The total number will be 2*num.x.labels + 1. Defaults to 5.
`...` | further arguments to be passed to or from methods.

### Value

A plot is created on the current graphics device.

### See Also

`localZScore`

### Examples

    genome <- filterChromosomes(getGenome("hg19"), keep.chr="chr1")
    A <- createRandomRegions(nregions=20, length.mean=10000000, length.sd=20000, genome=genome, non.overlapping=FALSE)
    B <- c(A, createRandomRegions(nregions=10, length.mean=100000, length.sd=20000, genome=genome, non.overlapping=FALSE))

    pt <- overlapPermTest(A=A, B=B, ntimes=10, genome=genome, non.overlapping=FALSE)

    lz <- localZScore(A=A, B=B, pt=pt)
    plot(lz)

    pt2 <- permTest(A=A, B=B, ntimes=10, randomize.function=randomizeRegions, evaluate.function=list(overlap=numOverlaps, distance=meanDistance), genome=genome, non.overlapping=FALSE)
    plot(pt2)

[Package regioneR version 1.16.5 Index]