getKeggDefinitions {readat} | R Documentation

## KEGG definitions, modules, and pathways by AptamerId

### Description

Gets the KEGG definitions, modules, and pathways associated with SomaLogic aptamer IDs.

### Usage

    getKeggDefinitions(aptamerIds = NULL, simplify = FALSE)

    getKeggModules(aptamerIds = NULL, simplify = FALSE)

    getKeggPathways(aptamerIds = NULL, simplify = FALSE)

### Arguments

`aptamerIds` | A character vector of SomaLogic aptamer IDs, or `NULL` to use all aptamer IDs.
`simplify` | Logical. Should the output be collapsed into a single data.frame?

### Value

A list of data frames. The names of the list are the input aptamerIds, and the data frame associated with that element contains:

UniProtId

  Character. UniProt ID for the protein target.

KeggId

  Character. KEGG ID for the gene that produces the target protein.

KeggDefinition

  Character. Description corresponding to the KEGG ID.

KeggCytogenicLocation

  Character. KEGG determination of the gene's locus.

### Examples

    # Each AptamerId may have one, many, or zero associated KEGG descriptions
    getKeggDefinitions(c("2278-61", "3505-6", "4916-2"))
    getKeggModules(c("2278-61", "3505-6", "4916-2"))
    getKeggPathways(c("2278-61", "3505-6", "4916-2"))

    # Get everything in the 1310 and 1129 panels.
    ## Not run:
    getKeggDefinitions()
    getKeggModules()
    getKeggPathways()

    ## End(Not run)

[Package readat version 1.10.0 Index]