plotTRM {rTRM} | R Documentation

## Plot an annotated TRM.

### Description

This function plots the output findTRM() after it has been annotated with cluster information with annotateTRM() function. Cluster membership is plotted using a pie plot.

### Usage

    plotTRM(g, layout = layout.fruchterman.reingold, mar = .5, vertex.col, vertex.cex, vertex.lwd, edge.col, edge.lwd, edge.lty, label = TRUE, label.cex, label.col, label.pos = NULL, label.offset = 1.5, adjust.label.col = FALSE, normalize.layout = TRUE)

### Arguments

`g` | a network object with cluster information (attribute piecolor).
`layout` | graph layout, either a function or the output of a layout function.
`mar` | plot margin.
`vertex.col` | node color.
`vertex.cex` | node size.
`vertex.lwd` | node border line width.
`edge.col` | edge color.
`edge.lwd` | edge line width.
`edge.lty` | edge line type.
`label` | logical; whether to plot labels.
`label.cex` | label expansion.
`label.col` | label color.
`label.pos` | label position.
`label.offset` | label offset.
`adjust.label.col` | whether to automatically adjust label color depending on the luminance of the node's color.
`normalize.layout` | whether to apply layout.norm (with limits xmin=-1, xmax=1, ymin=-1, ymax=1) to the layout.

### Author(s)

Diego Diez

[Package rTRM version 1.22.0 Index]