GetProteins             Extract information from rTANDEM result object
getTaxoFromXML          Converts X!Tandem xml files to R objects and
                        vice versa
ms2.plot                Plot spectrum from a rTResult object
rTANDEM-package         An R encapsulation of X!TANDEM ('Jackhammer'
                        release, 2013.06.15)
rTParam                 Creates and manipulates parameter objects for
                        rTANDEM
rTResult-class          Class "rTResult" and "rTResult_s"
tandem                  Calls X!TANDEM ('Jackhammer' release,
                        2013.06.15) from R objects or xml files
