83a2b6fc667d32a5b0f01e376e75189f *CITATION
532cc9202af2ad79c966530873ea8b41 *DESCRIPTION
cfbe91807c6f63cc7df0574b8edca909 *INDEX
413b9d3f43106233edc4c6c77dc76ef8 *Meta/Rd.rds
8feda196aceab749fdccc6eeb15ed656 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
6a5ef7b5dd49ece012545064adfbce92 *Meta/hsearch.rds
198e5e2f199abb245832d5cade79494c *Meta/links.rds
5c7c9c033606be578696379df6040b90 *Meta/nsInfo.rds
92c4f35c1a3f171b8d33a28250a66a9e *Meta/package.rds
63ed8e32e5be94344bad47285cab4849 *Meta/vignette.rds
9cb245f3b6f827bc58d20e4ab8fb9997 *NAMESPACE
9132f851662db76100a357bab3df8769 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/rBiopaxParser
79f527c9bf3bb1d27792780b2da0c990 *R/rBiopaxParser.rdb
76024a7de40ae6aacf396f4beedb4aed *R/rBiopaxParser.rdx
a2cacd4e504b743f3c2ae829a6199854 *data/biopaxLevel3Example.RData
4d457ce88c677a32d0a0d8b22d12c911 *data/biopaxexample.rda
12be2f65bbcfb5bab7cb0fca76f01295 *doc/index.html
26497d2f36f9829a2951fa4f3d18c48d *doc/rBiopaxParserVignette.R
2c60f2d900df4798b76e963621beaf1f *doc/rBiopaxParserVignette.Rnw
a22a811d8e70d2db49c011d99e859eb8 *doc/rBiopaxParserVignette.pdf
4764424737cd41c5c52a3d339e55141c *help/AnIndex
1128b6d1e94c70fc55fe43a01773b6ee *help/aliases.rds
4255f8abd6830b7e377a879fc707a948 *help/paths.rds
3916a4873017a3030400b81c4965670c *help/rBiopaxParser.rdb
6f87102c63a0e48651a231b647e9b7db *help/rBiopaxParser.rdx
36b0aed2cb82a8005611dafc1ebd9051 *html/00Index.html
363bc024c3732dadfdf28082f2d108cb *html/CLASS_INHERITANCE_BP2.html
199b190464ec84e6ef1a6897f921ad98 *html/CLASS_INHERITANCE_BP3.html
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b6763e6916890c631fdc3f2643803b1a *html/R.css
c0f865b94a7c56f763e523225dd33c99 *html/addBiochemicalReaction.html
475189a8bd4c074c3bdf73756662208e *html/addBiopaxInstance.html
b43fdcf74e61c3b1c70eee7de5625a8a *html/addBiopaxInstances.html
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8fb0e2596c500a7ddabbda762af6ca9d *html/addPhysicalEntity.html
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a9d2ff551cb90cb393a2d0204e3ab643 *html/addhash.html
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8b8e32e33c3816426d6cd068afce74f3 *html/biopax.html
7d8b4f800f28a126cb813bddcd67a6a3 *html/calcGraphOverlap.html
adf7fd88087ca64f9dea3c57dbe76ab5 *html/checkValidity.html
b409852f2c8cf71f811fba6a6f645a33 *html/colorGraphNodes.html
699da50f59c012b488dd43ab669928bf *html/combineNodes.html
cd9f2dc33e7bed4bb9d27d112f792d4c *html/createBiopax.html
1b07212a92a98c2d538c0f74a56196be *html/diffGraphs.html
072a4cd70c6406b41a9d4320f60f8b06 *html/downloadBiopaxData.html
ba16c3a0bb411f7fed7a267df55d32f5 *html/generateNewUniqueID.html
9d342374497f8da08d436601ac0a84b8 *html/getClassProperties.html
ed0d1beadff06e580f8256f56964bd5a *html/getInstanceClass.html
8a19bade4defc6150ee8245c1c4624af *html/getInstanceProperty.html
243eeb598438f54c92344145aa331eed *html/getNeighborhood.html
19ab04e3deef3f7756de2bd33ca7dd71 *html/getParticipants.html
4494b0473fbac3f72610f2bfede1612d *html/getReferencedIDs.html
d515d7e68086c82d10957e93bd7af5e1 *html/getReferencingIDs.html
58e621b3b949f0349bb5207e6129b093 *html/getSubClasses.html
3763fce39c2d222074d3dfb79c6da32e *html/getSuperClasses.html
743d258810720094d2b53015cccd11db *html/getXrefAnnotations.html
89779a4ae9aa75848fe231ac408ceab4 *html/hasProperty.html
df88df9bcbe1e4839b1153c953b93d86 *html/internal_NrOfXMLNodes.html
b24e0a9ceaab992f07cb9a9e652715ad *html/internal_XMLInstance2DF.html
ab9808b65f72f6d93b8c632a1fe08aa6 *html/internal_checkArguments.html
05fa861fdf8b0dec37a33e555738af96 *html/internal_generateXMLfromBiopax.html
1948411b5fff97bdfce9d54ee6d55514 *html/internal_getBiopaxModelAsDataFrame.html
7b0f6556e300d1821c7c9c5ac74488ed *html/internal_propertyListToDF.html
670d2cd1c6b1c9edeea74226b5388d79 *html/internal_resolvePhysicalEntityParticipant.html
1d42cfe82734f79f8588bd70efe566d1 *html/intersectGraphs.html
e2953de68b86653e59e79a0a9c1485b1 *html/isOfClass.html
1edc24a7711f87f7a5bdf8acd5c474c7 *html/isOfNamespace.html
be5f64d087cbdb8ab40044f088a0a0cd *html/isURL.html
48b46605e514688e59ae651f93540541 *html/layoutRegulatoryGraph.html
1af073f2bca62f80ae5c4a55540a0f2b *html/listComplexComponents.html
c0548def6d3ad52dcb5f0a6ba9f402ad *html/listInstances.html
3220a8b6419366bc03d92e9fd772dcee *html/listInteractionComponents.html
0173c8dcf16c66beb1891ded8f60c20f *html/listPathwayComponents.html
02e6016f0f8d5f3a55ce8280ad672193 *html/listPathways.html
0ec2bcf4c426b18bde2df0867c6bc60e *html/mergePathways.html
dbf8bcbec828b4445c9531982f483277 *html/pathway2AdjacancyMatrix.html
8ffb7046e06445ac9103489cef55ad72 *html/pathway2Geneset.html
1ae2fcc3f8bff81747dbeeea06f91f4d *html/pathway2Graph.html
ddc20cbcfb105a5af0ff52edc33b656d *html/pathway2RegulatoryGraph.html
eda0f64ecf614294f0612e9bafbdf96e *html/plotRegulatoryGraph.html
8199d66c1514823d8242ef6d85c120b7 *html/print.biopax.html
4d5119c65102f34c11cb26671e8a5730 *html/rBiopaxParser-package.html
5061b7e697befb1c4b7858c6b74f2759 *html/readBiopax.html
d21d48485cd0268d163c0b20ba844d20 *html/removeDisconnectedParts.html
a6396f1cb8833ba3ab0df9342d87cdb4 *html/removeInstance.html
b2da072addadbeff020a884231fd32e1 *html/removeNodes.html
fc19bc83e9766dc2c42f118904adfb57 *html/removeProperties.html
7b0974047b68ee710ccb99888cca75c0 *html/selectInstances.html
a824a175229be722a257223dd85abd3a *html/splitComplex.html
24983b792e446dde54f55744d6aad50f *html/striphash.html
aac41bcc93393e2088898de05ff917ee *html/stripns.html
15c0ff46a14deaba5335a0925a965328 *html/transitiveClosure.html
1871e4efdb149663f3627b7abdb85526 *html/transitiveReduction.html
834ac74033601f49b5a7ba78ef5e553e *html/unfactorize.html
923af0e65a28a3d0179d25b3df9e6388 *html/uniteGraphs.html
57c8a5cfbe507bfa3cc9028bb0bf09c2 *html/writeBiopax.html
9557d3501e1f91229ccc5872088b192c *unitTests/test_biopax2Classes.R
ca24da47dabac88d04f0321c80284c69 *unitTests/test_downloadBiopaxData.R
98e65fb4ec6db14354f8dc92ea1013cc *unitTests/test_helperFunctions.R
