getContrInteractionsInRefseq {r3Cseq} | R Documentation

## identified significant interaction regions for RefSeq genes

### Description

Get a list of genes that contain strong interaction signals in the control

### Usage

    getContrInteractionsInRefseq(obj,cutoff.qvalue=0.05,expanded_upstream=50e3,expanded_downstream=10e3)

### Arguments

`obj` | obj is r3Cseq or r3CseqInBatch object
`cutoff.qvalue` | Numeric. The cutoff q-value (default=0.05)
`expanded_upstream` | Numeric. The expanded distance from the upstream of a gene start (default=50e3)
`expanded_downstream` | Numeric. The expanded distance from the downstream of a gene end (default =10e3)

### Value

List of identified genes, which contain strong interaction signals

### Author(s)

S. Thongjuea

### See Also

`getContrInteractionsInRefseq`

### Examples

     # See the vignette

[Package r3Cseq version 1.30.0 Index]