rnadeg {qcmetrics} | R Documentation

## A simple RNA degradation QC for Affymetrix arrays

### Description

A simple wrapper function that uses `affy`'s RNA degradation curves and `yaqcaffy`'s actin and GAPDH 3'/5' ratios to generate a simple RNA degradation `QcMetrics` results. Optionally generates a QC report. See the `qcmetrics` vignette for an explanation of the function and an example.

### Usage

      rnadeg(input, status, type,
        reportname = "rnadegradation")

### Arguments

`input` | A `character` of CEL file names or an instance of class `affybatch`.
`status` | A `logical` of length 2 to set the respective `QcMetric`'s statuses.
`type` | The `type` of the report to be generated. Is missing, no report is generated.
`reportname` | The name of the report.

### Value

Invisibly return the `QcMetrics` for the `input`.

### Author(s)

Laurent Gatto

### See Also

`QcMetric` and `QcMetrics` for details about the QC infrastructure and `qcReport` for information about the report generation.

[Package qcmetrics version 1.22.0 Index]