plot_outliers {qckitfastq} | R Documentation

## Determine how to plot outliers. Heuristic used is whether their obsexp_ratio differs by more than 1 and whether they fall into the same bin or not. If for 2 outliers, obsexp_ratio differs by less than .4 and they are in the same bin, then combine into a single plotting point. NOT FULLY FUNCTIONAL

### Description

Determine how to plot outliers. Heuristic used is whether their obsexp_ratio differs by more than 1 and whether they fall into the same bin or not. If for 2 outliers, obsexp_ratio differs by less than .4 and they are in the same bin, then combine into a single plotting point. NOT FULLY FUNCTIONAL

### Usage

    plot_outliers(overkm, top_num)

### Arguments

`overkm` | data frame with columns pos, obsexp_ratio, and kmer that has already been reordered by descending obsexp_ratio
`top_num` | number of most overrepresented kmers to plot. Default is 5.

### Value

currently 0 as function is not fully working.

[Package qckitfastq version 1.0.1 Index]